Complete genome sequencing and analysis of Saprospira grandis str. Lewin, a predatory marine bacterium

Jimmy H.W. Saw, Anton Yuryev, Masaomi Kanbe, Shaobin Hou, Aaron G. Young, Shin Ichi Aizawa, Maqsudul Alam

Research output: Contribution to journalArticlepeer-review

28 Scopus citations

Abstract

Saprospira grandis is a coastal marine bacterium that can capture and prey upon other marine bacteria using a mechanism known as 'ixotrophy'. Here, we present the complete genome sequence of Saprospira grandis str. Lewin isolated from La Jolla beach in San Diego, California. The complete genome sequence comprises a chromosome of 4.35 Mbp and a plasmid of 54.9 Kbp. Genome analysis revealed incomplete pathways for the biosynthesis of nine essential amino acids but presence of a large number of peptidases. The genome en-codes multiple copies of sensor globin-coupled rsbR genes thought to be essential for stress response and the presence of such sensor globins in Bacteroidetes is unprecedented. A total of 429 spacer sequences within the three CRISPR repeat regions were identified in the ge-nome and this number is the largest among all the Bacteroidetes sequenced to date.

Original languageEnglish
Pages (from-to)84-93
Number of pages10
JournalStandards in Genomic Sciences
Volume6
Issue number1
DOIs
StatePublished - 2012
Externally publishedYes

Keywords

  • Gliding motility
  • Globin-coupled sensors
  • Predatory
  • Rhapidosomes
  • RsbR
  • Saprospira grandis

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