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• 2010

  The future of the journal? Integrating research data with scientific discourse

  De Waard, A., Jan 1 2010, In: Logos (Netherlands). 21, 1-2, p. 7-11 5 p.

  Research output: Contribution to journal › Review article › peer-review
  1 Scopus citations
• 2009

  A Grammar of Bantawa: Grammar, paradigm tables, glossary and texts of a Rai language of Eastern Nepal

  Doornenbal, M., Nov 9 2009, Utrecht: LOT Publications. 513 p.

  Research output: Book/Report › Book › peer-review

  Open Access
  10 Scopus citations

• A short survey of discourse representation models

  Groza, T., Handschuh, S., Clark, T., Shum, S. B. & De Waard, A., Dec 1 2009, In: CEUR Workshop Proceedings. 523

  Research output: Contribution to journal › Conference article › peer-review

  1 Scopus citations

• Developing technologies in biodefense research: Computational drug design

  Clark, M., Meshkat, S., Talbot, G., Konteatis, Z., Ludington, J., Zou, J., Freedman, S. J. & Wiseman, J. S., Jun 1 2009, In: Drug Development Research. 70, 4, p. 279-287 9 p.

  Research output: Contribution to journal › Review article › peer-review
  3 Scopus citations

• EU policies in personalized medicine-related technologies

  Gaisser, S., Vignola-Gagné, E., Hüsing, B., Enzing, C. & van der Valk, T., 2009, In: Personalized Medicine. 6, 1, p. 93-102 10 p.

  Research output: Contribution to journal › Article › peer-review
  7 Scopus citations

• Fragment-based computation of binding free energies by systematic sampling

  Clark, M., Meshkat, S., Talbot, G. T., Carnevali, P. & Wiseman, J. S., Aug 24 2009, In: Journal of Chemical Information and Modeling. 49, 8, p. 1901-1913 13 p.

  Research output: Contribution to journal › Article › peer-review
  32 Scopus citations

• Fragment-based prediction of the clinical occurrence of long qt syndrome and torsade de pointes

  Clark, M. & Wiseman, J. S., Nov 23 2009, In: Journal of Chemical Information and Modeling. 49, 11, p. 2617-2626 10 p.

  Research output: Contribution to journal › Article › peer-review
  10 Scopus citations

• Grand canonical free-energy calculations of protein - Ligand binding

  Clark, M., Meshkat, S. & Wiseman, J. S., Apr 27 2009, In: Journal of Chemical Information and Modeling. 49, 4, p. 934-943 10 p.

  Research output: Contribution to journal › Article › peer-review
  26 Scopus citations

• Hypotheses, evidence and relationships: The HypER approach for representing scientific knowledge claims

  De Waard, A., Shum, S. B., Carusi, A., Park, J., Samwald, M. & Sándor, Á., Dec 1 2009, In: CEUR Workshop Proceedings. 523

  Research output: Contribution to journal › Conference article › peer-review

  2 Scopus citations

• Identifying the Epistemic Value of Discourse Segments in Biology Texts

  De Waard, A., Buitelaar, P. & Eigner, T., 2009, Proceedings of the 8th International Conference on Computational Semantics, IWCS 2009. Bunt, H., Petukhova, V. & Wubben, S. (eds.). Association for Computational Linguistics (ACL), p. 351-354 4 p. (Proceedings of the 8th International Conference on Computational Semantics, IWCS 2009).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  12 Scopus citations

• Reuse, not recycle

  Plume, A., Jan 2009, In: Scientist. 23, 1, p. 18 1 p.

  Research output: Contribution to journal › Letter › peer-review

• XQuery in the browser

  Fourny, G., Pilman, M., Florescu, D., Kossmann, D., Kraska, T. & McBeath, D., Dec 1 2009, WWW'09 - Proceedings of the 18th International World Wide Web Conference. p. 1011-1020 10 p. (WWW'09 - Proceedings of the 18th International World Wide Web Conference).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review
  6 Scopus citations
• 2008

  CyclinPred: A SVM-based method for predicting cyclin protein sequences

  Kalita, M. K., Nandal, U. K., Pattnaik, A., Sivalingam, A., Ramasamy, G., Kumar, M., Raghava, G. P. S. & Gupta, D., Jul 2 2008, In: PLoS ONE. 3, 7, e2605.

  Research output: Contribution to journal › Article › peer-review

  Open Access
  23 Scopus citations

• Modeling scientific research articles - Shifting perspectives and persistent issues

  De Waard, A. & Kircz, J., Dec 1 2008, Open Scholarship: Authority, Community, and Sustainability in the Age of Web 2.0 - Proceedings of the 12th International Conference on Electronic Publishing, ELPUB 2008. p. 234-245 12 p. (Open Scholarship: Authority, Community, and Sustainability in the Age of Web 2.0 - Proceedings of the 12th International Conference on Electronic Publishing, ELPUB 2008).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  10 Scopus citations

• Phylogenomic and functional analysis of pterin-4a-carbinolamine dehydratase family (COG2154) proteins in plants and microorganisms

  Naponelli, V., Noiriel, A., Ziemak, M. J., Beverley, S. M., Lye, L. F., Plume, A. M., Botella, J. R., Loizeau, K., Ravanel, S., Rébeillé, F., De Crécy-Lagard, V. & Hanson, A. D., Apr 2008, In: Plant Physiology. 146, 4, p. 1515-1527 13 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access
  27 Scopus citations
• 2007

  A pragmatic structure for research articles

  De Waard, A., Dec 1 2007, Proceedings of the 2nd International Conference on the Pragmatic Web: "Building Common Ground on the Web", ICPW '07. p. 83-89 7 p. (ACM International Conference Proceeding Series; vol. 280).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review
  8 Scopus citations

• Do open access articles have greater citation impact?. A critical review of the literature

  Craig, I. D., Plume, A. M., McVeigh, M. E., Pringle, J. & Amin, M., Jul 2007, In: Journal of Informetrics. 1, 3, p. 239-248 10 p.

  Research output: Contribution to journal › Review article › peer-review
  214 Scopus citations

• Use Case: Drug Ontology Project for Elsevier (DOPE)

  de Waard, A., van Harmelen, F. & Fluit, C., Jul 2007

  Research output: Other contribution
• 2006

  Benchmarking scientific output in the social sciences and humanities: The limits of existing databases

  Archambault, É., Vignola-Gagné, É., Côté, G., Larivière, V. & Gingrasb, Y., Dec 2006, In: Scientometrics. 68, 3, p. 329-342 14 p.

  Research output: Contribution to journal › Article › peer-review
  259 Scopus citations

• Development and evaluation of an in silico model for hERG binding

  Song, M. & Clark, M., Jan 1 2006, In: Journal of Chemical Information and Modeling. 46, 1, p. 392-400 9 p.

  Research output: Contribution to journal › Article › peer-review
  105 Scopus citations

• Grand canonical Monte Carlo simulation of ligand - Protein binding

  Clark, M., Guarnieri, F., Shkurko, I. & Wiseman, J., Jan 1 2006, In: Journal of Chemical Information and Modeling. 46, 1, p. 231-242 12 p.

  Research output: Contribution to journal › Article › peer-review
  80 Scopus citations

• The ABCDE format enabling semantic conference proceedings

  De Waard, A. & Tel, G., Dec 1 2006, In: CEUR Workshop Proceedings. 206, p. 97-108 12 p.

  Research output: Contribution to journal › Conference article › peer-review

• The place of serials in referencing practices: Comparing natural sciences and engineering with social sciences and humanities

  Larivière, V., Archambault, É., Gingras, Y. & Vignola-Gagné, É., Jun 2006, In: Journal of the American Society for Information Science and Technology. 57, 8, p. 997-1004 8 p.

  Research output: Contribution to journal › Article › peer-review
  164 Scopus citations
• 2005

  Generalized fragment-substructure based property prediction method

  Clark, M., Jan 1 2005, In: Journal of Chemical Information and Modeling. 45, 1, p. 30-38 9 p.

  Research output: Contribution to journal › Article › peer-review
  56 Scopus citations
• 2004

  A topic-based browser for large online resources

  Stuckenschmidt, H., De Waard, A., Bhogal, R., Fluit, C., Kampman, A., Van Buel, J., Van Mulligen, E., Broekstra, J., Crowlesmith, I., Van Harmelen, P. & Scerri, T., Dec 1 2004, In: Lecture Notes in Artificial Intelligence (Subseries of Lecture Notes in Computer Science). 3257, p. 433-448 16 p.

  Research output: Contribution to journal › Conference article › peer-review
  6 Scopus citations

• Exploring Large Document Repositories with RDF Technology: The DOPE Project

  Stuckenschmidt, H., Van Harmelen, F., De Waard, A., Tony, S., Bhogal, R., Van Buel, J., Crowlesmith, I., Fluit, C., Kampman, A., Broekstra, J. & Van Mulligen, E., Jan 1 2004, In: IEEE Intelligent Systems. 19, 3, p. 34-40 7 p.

  Research output: Contribution to journal › Article › peer-review
  37 Scopus citations
• 2003

  A conversation with Saul Roseman

  Gracy, K. N., Jan 1 2003, In: Biochemical and Biophysical Research Communications. 300, 1, p. 5-8 4 p.

  Research output: Contribution to journal › Article › peer-review
  3 Scopus citations
• 2002

  A conversation with Eugene Kennedy

  Gracy, K. N., Jan 1 2002, In: Biochemical and Biophysical Research Communications. 294, 3, p. 519-520 2 p.

  Research output: Contribution to journal › Article › peer-review

• A conversation with Frank Westheimer

  Noelle Gracy, K., Jan 1 2002, In: Biochemical and Biophysical Research Communications. 296, 1, p. 5-7 3 p.

  Research output: Contribution to journal › Editorial

• A conversation with John E. Walker

  Noelle Gracy, K., Jan 1 2002, In: Biochemical and Biophysical Research Communications. 298, 1, p. 1-4 4 p.

  Research output: Contribution to journal › Article › peer-review

• A conversation with Thomas D. Pollard

  Noelle Gracy, K., Jan 1 2002, In: Biochemical and Biophysical Research Communications. 297, 1, p. 6-9 4 p.

  Research output: Contribution to journal › Article › peer-review

• A conversation with Wan Kyoo Cho

  Noelle Gracy, K., Jan 1 2002, In: Biochemical and Biophysical Research Communications. 297, 5, p. 1071-1074 4 p.

  Research output: Contribution to journal › Article › peer-review
• 2001

  Opiate withdrawal-induced Fos immunoreactivity in the rat extended amygdala parallels the development of conditioned place aversion

  Gracy, K. N., Dankiewicz, L. A. & Koob, G. F., 2001, In: Neuropsychopharmacology. 24, 2, p. 152-160 9 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access
  104 Scopus citations
• 2000

  Heroin-specific stimuli reinstate operant heroin-seeking behavior in rats after prolonged extinction

  Gracy, K. N., Dankiewicz, L. A., Weiss, F. & Koob, G. F., Mar 2000, In: Pharmacology Biochemistry and Behavior. 65, 3, p. 489-494 6 p.

  Research output: Contribution to journal › Article › peer-review
  48 Scopus citations

• Microinjections of an opiate receptor antagonist into the bed nucleus of the stria terminalis suppress heroin self-administration in dependent rats

  Walker, J. R., Ahmed, S. H., Gracy, K. N. & Koob, G. F., Jan 31 2000, In: Brain Research. 854, 1-2, p. 85-92 8 p.

  Research output: Contribution to journal › Article › peer-review
  60 Scopus citations

• Ultrastructural localization of nitrotyrosine within the caudate-putamen nucleus and the globus pallidus of normal rat brain

  Bolan, E. A., Noelle Gracy, K., Chan, J., Trifiletti, R. R. & Pickel, V. M., Jul 1 2000, In: Journal of Neuroscience. 20, 13, p. 4798-4808 11 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access
  38 Scopus citations
• 1999

  N-methyl-D-aspartate receptor 1 in the caudate-putamen nucleus: Ultrastructural localization and co-expression with sorcin, a 22,000 mol. wt calcium binding protein

  Gracy, K. N., Clarke, C. L., Meyers, M. B. & Pickel, V. M., 1999, In: Neuroscience. 90, 1, p. 107-117 11 p.

  Research output: Contribution to journal › Article › peer-review
  26 Scopus citations

• μ-Opioid and NMDA-type glutamate receptors are often colocalized in spiny neurons within patches of the caudate-putamen nucleus

  Wang, H., Gracy, K. N. & Pickel, V. M., Sep 13 1999, In: Journal of Comparative Neurology. 412, 1, p. 132-146 15 p.

  Research output: Contribution to journal › Article › peer-review
  56 Scopus citations
• 1998

  Erratum: Ultrastructural localization and comparative distribution of nitric oxide synthase and N-methyl-D-aspartate receptors in the shell of the rat nucleus accumbens (Brain Research (1997) 747 (259-272))

  Gracy, K. N. & Pickel, V. M., Jun 15 1998, In: Brain Research. 796, 1-2, p. 332 1 p.

  Research output: Contribution to journal › Comment/debate
• 1997

  Detection of delta opioid receptor and N-methyl-D-aspartate receptor- like immunoreactivity in retinoic acid-differentiated neuroblastoma x glioma (NG108-15) cells

  Beczkowska, I. W., Gracy, K. N., Pickel, V. M. & Inturrisi, C. E., Jan 1 1997, In: Journal of Neuroscience Research. 47, 1, p. 83-89 7 p.

  Research output: Contribution to journal › Article › peer-review
  10 Scopus citations

• Dual ultrastructural localization of μ-opioid receptors and NMDA-type glutamate receptors in the shell of the rat nucleus accumbens

  Gracy, K. N., Svingos, A. L. & Pickel, V. M., 1997, In: Journal of Neuroscience. 17, 12, p. 4839-4848 10 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access
  107 Scopus citations

• Inducible expression of N-methyl-D-aspartate receptor, and delta and mu opioid receptor messenger RNAs and protein in the NT2-N human cell line

  Beczkowska, I. W., Gracy, K. N., Pickel, V. M. & Inturrisi, C. E., May 26 1997, In: Neuroscience. 79, 3, p. 855-862 8 p.

  Research output: Contribution to journal › Article › peer-review
  15 Scopus citations

• Ultrastructural localization and comparative distribution of nitric oxide synthase and N-methyl-D-aspartate receptors in the shell of the rat nucleus accumbens

  Gracy, K. N. & Pickel, V. M., Feb 7 1997, In: Brain Research. 747, 2, p. 259-272 14 p.

  Research output: Contribution to journal › Article › peer-review
  68 Scopus citations
• 1996

  Ultrastructural immunocytochemical localization of the N-methyl-D-aspartate receptor and tyrosine hydroxylase in the shell of the rat nucleus accumbens

  Gracy, K. N. & Pickel, V. M., Nov 11 1996, In: Brain Research. 739, 1-2, p. 169-181 13 p.

  Research output: Contribution to journal › Article › peer-review
  97 Scopus citations
• 1995

  Comparative ultrastructural localization of the NMDAR1 glutamate receptor in the rat basolateral amygdala and bed nucleus of the stria terminalis

  Gracy, K. N. & Pickel, V. M., Nov 6 1995, In: Journal of Comparative Neurology. 362, 1, p. 71-85 15 p.

  Research output: Contribution to journal › Article › peer-review
  72 Scopus citations

• Dynorphin‐immunoreactive neurons in the rat nucleus accumbens: Ultrastructure and synaptic input from terminals containing substance P and/or dynorphin

  van Bockstaele, E. J., Gracy, K. N. & Pickel, V. M., Jan 2 1995, In: Journal of Comparative Neurology. 351, 1, p. 117-133 17 p.

  Research output: Contribution to journal › Article › peer-review
  34 Scopus citations
• 1993

  A computational study of the possible isomers and conformations of N-trifluoromethylformamide, CF₃NHC(O)H, and N-hydroxymethylidenetrifluoromethylamine, CF₃NC(H)OH

  Madappat, K. V., Clark, M. & Thrasher, J. S., Jan 1 1993, In: Journal of Molecular Structure: THEOCHEM. 285, 1, p. 1-15 15 p.

  Research output: Contribution to journal › Article › peer-review
  5 Scopus citations

• The Probability of Chance Correlation Using Partial Least Squares (PLS)

  Clark, M. & Cramer, R. D., Jan 1 1993, In: Quantitative Structure‐Activity Relationships. 12, 2, p. 137-145 9 p.

  Research output: Contribution to journal › Article › peer-review
  287 Scopus citations
• 1990

  Comparative molecular field analysis (CoMFA). 2. Toward its use with 3D-structural databases

  Clark, M., Cramer, R. D., Jones, D. M., Patterson, D. E. & Simeroth, P. E., Jan 1 1990, In: Tetrahedron Computer Methodology. 3, 1, p. 47-59 13 p.

  Research output: Contribution to journal › Article › peer-review
  224 Scopus citations

• LAOCOON PC: NMR simulation on a personal computer

  Clark, M. & Thrasher, J. S., Dec 1 1990, In: Journal of Chemical Education. 67, 3, p. 235-236 2 p.

  Research output: Contribution to journal › Review article › peer-review
  17 Scopus citations