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2016

Distantly supervised Web relation extraction for knowledge base population

Augenstein, I., Maynard, D. & Ciravegna, F., Jan 1 2016, In : Semantic Web. 7, 4, p. 335-349 15 p.

Research output: Contribution to journalArticle

Open Access
15 Scopus citations

Dynamic Clustering of Streaming Short Documents.

Liang, S., Yilmaz, E. & Kanoulas, E., 2016, KDD '16 Proceedings of the 22nd ACM SIGKDD International Conference on Knowledge Discovery and Data Mining.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

42 Scopus citations

Explainable User Clustering in Short Text Streams.

Zhao, Y., Liang, S., Ren, Z., Ma, J., Yilmaz, E. & de Rijke, M., 2016, SIGIR '16 Proceedings of the 39th International ACM SIGIR conference on Research and Development in Information Retrieval.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

25 Scopus citations

Individual motivation and threat indicators of collaboration readiness in scientific knowledge producing teams: a scoping review and domain analysis

Lotrecchiano, G. R., Mallinson, T. R., Leblanc-Beaudoin, T., Schwartz, L. S., Lazar, D. & Falk-Krzesinski, H. J., May 1 2016, In : Heliyon. 2, 5, e00105.

Research output: Contribution to journalArticle

Open Access
7 Scopus citations

Learning domain labels using conceptual fingerprints: An in-use case study in the neurology domain

Afzal, Z., Tsatsaronis, G., Doornenbal, M., Coupet, P. & Gregory, M., Jan 1 2016, Knowledge Engineering and Knowledge Management - 20th International Conference, EKAW 2016, Proceedings. Ciancarini, P., Poggi, F., Vitali, F. & Blomqvist, E. (eds.). Springer Verlag, p. 731-745 15 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 10024 LNAI).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Modeling Ebola Spread and Using HPCC/KEL System. In: Big Data Technologies and Applications.

Shaw, J., Villanustre, F., Agarwal, A. & Jain, A., 2016

Research output: Book/ReportBook

Pilot analysis of the Motivation Assessment for Team Readiness, Integration, and Collaboration (MATRICx) using Rasch analysis

Mallinson, T., Lotrecchiano, G. R., Schwartz, L. S., Furniss, J., Leblanc-Beaudoin, T., Lazar, D. & Falk-Krzesinski, H. J., Oct 1 2016, In : Journal of Investigative Medicine. 64, 7, p. 1186-1193 8 p.

Research output: Contribution to journalArticle

3 Scopus citations

Preliminary study on the impact of literature curation in a model organism database on article citation rates

Berardini, T., Daniel, R., Lauruhn, M. & Reiser, L., Jan 1 2016, In : D-Lib Magazine. 22, 9-10

Research output: Contribution to journalArticle

1 Scopus citations

Research data management at Elsevier: Supporting networks of data and workflows

De Waard, A., Sep 1 2016, In : Information Services and Use. 36, 1-2, p. 49-55 7 p.

Research output: Contribution to journalArticle

Open Access
5 Scopus citations

The "BigSE" project: lessons learned from validating industrial text mining

Krishna, R., Yu, Z., Agrawal, A., Dominguez, M. & Wolf, D., 2016, BIGDSE '16 Proceedings of the 2nd International Workshop on BIG Data Software Engineering .

Research output: Chapter in Book/Report/Conference proceedingConference contribution

4 Scopus citations

The HPCC/ECL Platform for Big Data. In: Big Data Technologies and Applications

Middleton, A. M., Bayliss, D. A., Furht, B., Halliday, G. & Chala, A., 2016

Research output: Book/ReportBook

Using research metrics responsibly and effectively as a researcher.

Darroch, P. I. & Colledge, L., 2016, In : Infozine.

Research output: Contribution to journalArticle

Open Access
2015

Elsevier journal finder: Recommending journals for your paper

Kang, N., Doornenbal, M. & Schijvenaars, B., Sep 16 2015, RecSys 2015 - Proceedings of the 9th ACM Conference on Recommender Systems. Association for Computing Machinery, Inc, p. 261-264 4 p. (RecSys 2015 - Proceedings of the 9th ACM Conference on Recommender Systems).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

19 Scopus citations

Formalizing biomedical concepts from textual definitions

Petrova, A., Ma, Y., Tsatsaronis, G., Kissa, M., Distel, F., Baader, F. & Schroeder, M., Apr 2 2015, In : Journal of Biomedical Semantics. 6, 1, 22.

Research output: Contribution to journalArticle

Open Access
12 Scopus citations

Prediction of clinical risks by analysis of preclinical and clinical adverse events

Clark, M., Apr 1 2015, In : Journal of Biomedical Informatics. 54, p. 167-173 7 p.

Research output: Contribution to journalArticle

Open Access
12 Scopus citations

Pursuing a multidimensional path to research assessment – Elsevier’s approach to metrics

Darroch, P. I., 2015, The London School of Economics and Political Science - The Impact Blog .

Research output: Other contribution

The Resource Identification Initiative: A cultural shift in publishing

Resource Identification Initiative Members, May 29 2015, In : F1000Research. 4, 134.

Research output: Contribution to journalArticle

Open Access
21 Scopus citations
2014

Activating qualified thesaurus terms for automatic indexing with taxonomy-based WSD

Kohlhof, I., Kozlov, B. & Doornenbal, M., Dec 1 2014, In : Computational Linguistics in the Netherlands Journal. 4, p. 17-28 12 p.

Research output: Contribution to journalConference article

Analysing research outputs to support research innovation and international collaboration

Darroch, P. I., Thiel, V., Zigoni, A. & Aisati, M., 2014, Going Global – Global Education: Knowledge-Based Economies for the 21st Century. Emerald Group Publishing Ltd.

Research output: Chapter in Book/Report/Conference proceedingChapter

Black magic meta data - Get a glimpse behind the scene

Vestdam, T. V., Rasmussen, H. S. S. & Doornenbal, M., Jan 1 2014, In : Procedia Computer Science. 33, p. 239-244 6 p.

Research output: Contribution to journalConference article

Open Access
3 Scopus citations

Pharmacologic stimulation of Cytochrome P450 46A1 and Cerebral Cholesterol Turnover in Mice

Mast, N., Li, Y., Linger, M., Clark, M., Wiseman, J. & Pikuleva, I. A., Feb 7 2014, In : Journal of Biological Chemistry. 289, 6, p. 3529-3538 10 p.

Research output: Contribution to journalArticle

Open Access
35 Scopus citations

Ten habits of highly effective data

De Waard, A., Jan 1 2014, Discovery Informatics - Papers Presented at the 28th AAAI Conference on Artificial Intelligence, Technical Report. AI Access Foundation, 1 p. (AAAI Workshop - Technical Report; vol. WS-14-05).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

The impact of HECToR: Report for the Engineering and Physical Sciences Research Council

Steliaros, R., O'Brien, C. & Darroch, P. I., 2014

Research output: Other contribution

2013

Creating an Urban Legend: A System for Electrophysiology Data Management and Exploration

De Waard, A., Alder, J., Burton, S. D., Gerkin, R. C., Harviston, M., Marques, D., Tripathy, S. J. & Urban, N. N., Jan 1 2013, Discovery Informatics: AI Takes a Science-Centered View on Big Data - Papers from the AAAI Fall Symposium, Technical Report. AI Access Foundation, p. 23-27 5 p. (AAAI Fall Symposium - Technical Report; vol. FS-13-01).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Dynamic enhancement of drug product labels to support drug safety, efficacy, and effectiveness

Boyce, R. D., Horn, J. R., Hassanzadeh, O., Waard, A. D., Schneider, J., Luciano, J. S., Rastegar-Mojarad, M. & Liakata, M., Jan 26 2013, In : Journal of Biomedical Semantics. 4, 1, 5.

Research output: Contribution to journalArticle

Open Access
12 Scopus citations

Influenza Virus

Gracy, K. N. & Fitch, W., Feb 27 2013, Brenner's Encyclopedia of Genetics: Second Edition. Elsevier Inc., p. 77 1 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Studying scientific migration in Scopus

Moed, H. F., Aisati, M. & Plume, A., Jan 1 2013, In : Scientometrics. 94, 3, p. 929-942 14 p.

Research output: Contribution to journalArticle

35 Scopus citations

Wallace, Alfred Russel

Gracy, K. N. & Miller, J. H., Feb 27 2013, Brenner's Encyclopedia of Genetics: Second Edition. Elsevier Inc., p. 321 1 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Wilson, Edmund Beecher

Gracy, K. N. & Miller, J. H., Feb 27 2013, Brenner's Encyclopedia of Genetics: Second Edition. Elsevier Inc., p. 345 1 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

2012

Annotating evidence based clinical guidelines: A lightweight ontology

Hoekstra, R., De Waard, A. & Vdovjak, R., Jan 1 2012, In : CEUR Workshop Proceedings. 952

Research output: Contribution to journalConference article

2 Scopus citations

Application of data mining and visualization techniques for the prediction of drug-induced nausea in man

Parkinson, J., Muthas, D., Clark, M., Boyer, S., Valentin, J. P. & Ewart, L., Mar 13 2012, In : Toxicological Sciences. 126, 1, p. 275-284 10 p.

Research output: Contribution to journalArticle

Open Access
18 Scopus citations

Connecting closed world research information systems through the linked open data web

Joerg, B., Ruiz-Rube, I., Sicilia, M. A., Dvoák, J., Jeffery, K., Hoellrigl, T., Rasmussen, H. S., Engfer, A., Vestdam, T. & Barriocanal, E. G., May 1 2012, In : International Journal of Software Engineering and Knowledge Engineering. 22, 3, p. 345-364 20 p.

Research output: Contribution to journalArticle

19 Scopus citations

Formalising uncertainty: An ontology of reasoning, certainty and attribution (ORCA)

De Waard, A. & Schneider, J., Jan 1 2012, In : CEUR Workshop Proceedings. 930, p. 8-15 8 p.

Research output: Contribution to journalConference article

Improving future research communication and e-scholarship: A summary of findings

Bourne, P. E., Clark, T., Dale, R., De Waard, A., Hermane, I., Hovyf, E. & Shottong, D., Feb 1 2012, In : Informatik-Spektrum. 35, 1, p. 56-58 3 p.

Research output: Contribution to journalArticle

1 Scopus citations

In silico and intuitive predictions of CYP46A1 inhibition by marketed drugs with subsequent enzyme crystallization in complex with fluvoxamine

Mast, N., Linger, M., Clark, M., Wiseman, J., Stout, C. D. & Pikuleva, I. A., Nov 1 2012, In : Molecular Pharmacology. 82, 5, p. 824-834 11 p.

Research output: Contribution to journalArticle

22 Scopus citations

Productivity and impact of the top 100 cited Huntington's disease investigators

Sorensen, A. A., El Aisati, MH. & Weedon, D., 2012, In : Journal of Huntington's disease. 1, 1, p. 3-10 8 p.

Research output: Contribution to journalArticle

1 Scopus citations

Project Snowball - Sharing data for cross-institutional benchmarking

Colledge, L., Clements, A., Aisati, MH. E. & Rutherford, S., Jan 1 2012, p. 253-260. 8 p.

Research output: Contribution to conferencePaper

2 Scopus citations

Verb form indicates discourse segment type in biological research papers: Experimental evidence

de Waard, A. & Pander Maat, H., Dec 1 2012, In : Journal of English for Academic Purposes. 11, 4, p. 357-366 10 p.

Research output: Contribution to journalArticle

11 Scopus citations
2011

Preface

De Waard, A., Castro, A. G., Lange, C. & Sandhaus, E., Jan 1 2011, In : CEUR Workshop Proceedings. 721, p. iii

Research output: Contribution to journalEditorial

2010

From proteins to fairytales: Directions in semantic publishing

De Waard, A., Jul 26 2010, In : IEEE Intelligent Systems. 25, 2, p. 83-88 6 p., 5456415.

Research output: Contribution to journalArticle

22 Scopus citations

SJR and SNIP: two new journal metrics in Elsevier's Scopus

Colledge, L., De Moya-Anegón, F., Guerrero-Bote, V., López-Illescas, C., El Aisati, M. & Moed, H. F., Nov 1 2010, In : Serials. 23, 3, p. 215-221 7 p.

Research output: Contribution to journalArticle

Open Access
41 Scopus citations

The future of the journal? Integrating research data with scientific discourse

De Waard, A., Jan 1 2010, In : Logos (Netherlands). 21, 1-2, p. 7-11 5 p.

Research output: Contribution to journalReview article

1 Scopus citations
2009
7 Scopus citations

A short survey of discourse representation models

Groza, T., Handschuh, S., Clark, T., Shum, S. B. & De Waard, A., Dec 1 2009, In : CEUR Workshop Proceedings. 523

Research output: Contribution to journalConference article

1 Scopus citations

Developing technologies in biodefense research: Computational drug design

Clark, M., Meshkat, S., Talbot, G., Konteatis, Z., Ludington, J., Zou, J., Freedman, S. J. & Wiseman, J. S., Jun 1 2009, In : Drug Development Research. 70, 4, p. 279-287 9 p.

Research output: Contribution to journalReview article

3 Scopus citations

Fragment-based computation of binding free energies by systematic sampling

Clark, M., Meshkat, S., Talbot, G. T., Carnevali, P. & Wiseman, J. S., Aug 24 2009, In : Journal of Chemical Information and Modeling. 49, 8, p. 1901-1913 13 p.

Research output: Contribution to journalArticle

30 Scopus citations