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• 2019

  What’s new in oxygen therapy?

  Girardis, M., Alhazzani, W. & Rasmussen, B. S., Jul 1 2019, In: Intensive Care Medicine. 45, 7, p. 1009-1011 3 p.

  Research output: Contribution to journal › Editorial

  Open Access
  7 Scopus citations

• When Peer Reviewers Go Rogue - Estimated Prevalence of Citation Manipulation by Reviewers Based on the Citation Patterns of 69,000 Reviewers

  Baas, J. & Fennell, C., 2019, International Society for Scientometrics and Infometrics.

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • peers
  • records (publications)
  3 Scopus citations

• Women and spinouts: A case for action

  Manfredi, S., May 1 2019.

  Research output: Contribution to conference › Paper › peer-review

  • engineer
  • industry
  • education
• 2018

  A big data approach to the concordance of the toxicity of pharmaceuticals in animals and humans

  Clark, M. & Steger-Hartmann, T., Jul 1 2018, In: Regulatory Toxicology and Pharmacology. 96, p. 94-105 12 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Big Data
  • Toxicity
  • Animals
  • Big data
  • Data curation
  50 Scopus citations

• Academic Recommendations: The Mendeley Case

  Hristakeva, M, Pettit, B., Vargas, S. & Jack, K. , 2018, Collaborative Recommendations. World Scientific, p. 599-625

  Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review

  • Collaborative filtering
  • Recommender systems
  • Feedback

• Collaboratively Tracking Interests for User Clustering in Streams of Short Texts

  Liang, S., Yilmaz, E. & Kanoulas, E., 2018, IEEE Transactions on Knowledge and Data Engineering.

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • Sampling
  10 Scopus citations

• Coloring citations for scholars: investigating palettes

  Di Iorio, A., Mar 1 2018, In: Archived.

  Research output: Contribution to journal › Article › peer-review

  • Coloring
  • Digital libraries

• Combining pattern matching with word embeddings for the extraction of experimental variables from scientific literature

  Deus, H. F., Harper, C., McBeath, D. & Daniel, R., Jan 12 2018, Proceedings - 2017 IEEE International Conference on Big Data, Big Data 2017. Obradovic, Z., Baeza-Yates, R., Kepner, J., Nambiar, R., Wang, C., Toyoda, M., Suzumura, T., Hu, X., Cuzzocrea, A., Baeza-Yates, R., Tang, J., Zang, H., Nie, J-Y. & Ghosh, R. (eds.). Institute of Electrical and Electronics Engineers Inc., p. 4287-4292 6 p. (Proceedings - 2017 IEEE International Conference on Big Data, Big Data 2017; vol. 2018-January).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • Pattern Matching
  • Template
  • Pattern matching
  • Experiment
  • Temperature

• Comparing CNN and LSTM character-level embeddings in BiLSTM-CRF models for chemical and disease named entity recognition

  Zhai, Z., Nguyen, D. Q. & Verspoor, K., 2018, Proceedings of the 9th International Workshop on Health Text Mining and Information Analysis.

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

• Convolutional neural networks for chemical-disease relation extraction are improved with character-based word embeddings

  Nguyen, D. Q. & Verspoor, K., 2018, Proceedings of the Workshop on Biomedical Natural Language Processing.

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

• DATA:SEARCH'18 - Searching data on the web preface

  Groth, P., Koesten, L., Mayr, P., De Rijke, M. & Simperl, E., Jan 1 2018, In: CEUR Workshop Proceedings. 2127, p. 65-66 2 p.

  Research output: Contribution to journal › Editorial

  1 Scopus citations

• Data Skewer Profile

  Villanustre, F., 2018

  Research output: Non-textual form › Software

• Dest-ResNet: A Deep Spatiotemporal Residual Network for Hotspot Traffic Speed Prediction

  Zhang, J. & Gao, Y., 2018, In: Journal of the ACM.

  Research output: Contribution to journal › Article › peer-review

  • Traffic congestion
  10 Scopus citations

• Eleven quick tips for finding research data

  Khalsa, S. J., Michener, W., Psomopoulos, F. & Wu, M., Apr 1 2018, In: PLOS Computational Biology.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Observatories
  • Proteins
  • Genes
  • Earth (planet)
  • Health
  4 Scopus citations

• Eleven quick tips for finding research data

  Gregory, K., Khalsa, S. J., Michener, W. K., Psomopoulos, F. E., de Waard, A. & Wu, M., Apr 1 2018, In: PLoS Computational Biology. 14, 4

  Research output: Contribution to journal › Article › peer-review

• Elsevier's healthcare knowledge graph and the case for enterprise level linked data standards

  DeJong, A., Bord, R., Dowling, W., Hoekstra, R., Moquin, R., Charlie, O., Samarasinghe, M., Snyder, P., Stanley, C., Tordai, A., Trefry, M. & Groth, P., Jan 1 2018, In: CEUR Workshop Proceedings. 2180

  Research output: Contribution to journal › Conference article › peer-review

  • Linked data
  • Industry
  • Data integration
  1 Scopus citations

• Evaluating Open Information Extraction on Scientific and Medical Text

  Groth, P., Lauruhn, M., Scerri, A. & Daniel, R., Feb 16 2018

  Research output: Other contribution

  Open Access

  • Labeling

• Extending experimentation: oncology’s fading boundary between research and care

  Cambrosio, A., Keating, P., Vignola-Gagné, E., Besle, S. & Bourret, P., Jul 3 2018, In: New Genetics and Society. 37, 3, p. 207-226 20 p.

  Research output: Contribution to journal › Article › peer-review

  • Bioethics
  • Molecular Biology
  • Technology
  • bioethics
  • historian
  18 Scopus citations

• Finding better active learners for faster literature reviews

  Menzies, T., Jan 1 2018, In: Empirical Software Engineering.

  Research output: Contribution to journal › Article › peer-review

  • Problem-Based Learning
  • Medicine
  • Learning algorithms
  14 Scopus citations

• From data search to data showcasing: The role of semantic technologies in a new service

  Cotroneo, P., Haak, W., Oscares, G., Presani, E., Rohatgi, A. & Groth, P., Jan 1 2018, In: CEUR Workshop Proceedings. 2180

  Research output: Contribution to journal › Conference article › peer-review

  • Metadata
  • Semantics

• Genomic platforms and clinical research

  Cambrosio, A., Vignola-Gagné, E., Nelson, N., Keating, P. & Bourret, P., Jan 1 2018, Routledge Handbook of Genomics, Health and Society. Taylor and Francis Ltd., p. 142-150 9 p.

  Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review

  • Clinical research
  • Biomedical Technology
  • Equipment and Supplies
  • Bioinformatics
  • Computational Biology
  3 Scopus citations

• Global Unique ID Broker part of the NIH Data Commons initiative

  Waard, A., 2018

  Research output: Non-textual form › Software

• How deep learning is changing chemistry R&D

  Clark, M., Jun 1 2018, In: Reading for the R and D Community. 60, 2, p. 14-15 2 p.

  Research output: Contribution to journal › Short survey › peer-review

• How to be rich: a study of monsters and mice of american industry

  Yu, Z. & Menzies, T., 2018, HPCC Systems.

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

• Investigating Facets to Characterise Citations for Scholars

  Di Iorio, A., Limpens, F., Peroni, S., Rotondi, A., Tsatsaronis, G. & Achtsivassilis, J., Jan 1 2018, Semantics, Analytics, Visualization - 3rd International Workshop, SAVE-SD 2017, and 4th International Workshop, SAVE-SD 2018, Revised Selected Papers. Osborne, F., Peroni, S., Vahdati, S. & González-Beltrán, A. (eds.). Springer Verlag, p. 150-160 11 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 10959 LNCS).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • Citations
  • Digital libraries
  • Facet
  • Digital Libraries
  • Literature Review
  2 Scopus citations

• Jack the Reader - A machine reading framework

  Weissenborn, D., Minervini, P., Dettmers, T., Augenstein, I., Johannes Welb, J., Rocktaeschel, T., Bosnjak, M. & Mitchell, J., 2018, ACL 2018 - 56th Annual Meeting of the Association for Computational Linguistics, Proceedings of System Demonstration.

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

• Measure of National Return in International Science Cooperation

  Baas, J., 2018, In: STI 2018 conference Proceedings.

  Research output: Contribution to journal › Article › peer-review

  • public spending
  • National government

• Mining information interaction behavior

  Li, X., de Rijke, M. & Kanoulas, E., 2018

  Research output: Other contribution › peer-review

• Novelty Goes Deep: A Deep Neural Solution to Document Level Novelty Detection

  Chivukula, S. S. S. K., May 1 2018, In: Association for Computational Linguistics.

  Research output: Contribution to journal › Article › peer-review

  • Redundancy
  • Semantics
  • Neural networks

• On the semantic similarity of disease mentions in medline® and twitter

  Thorne, C. & Klinger, R., 2018, Natural Language Processing and Information Systems - 23rd International Conference on Applications of Natural Language to Information Systems, NLDB 2018, Proceedings. Meziane, F., Silberztein, M., Atigui, F., Kornyshova, E. & Metais, E. (eds.). Springer Verlag, p. 324-332 9 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 10859 LNCS).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • Semantic Similarity
  • Social Media
  • Semantics
  • Blogs
  • Corpus

• Openness and impact of leading scientific countries

  Baas, J., 2018, In: Frontiers in Research metrics and Analytics.

  Research output: Contribution to journal › Article › peer-review

  • OECD
  • public spending
  • research and development
  • budget
  • worker

• Optimized Machine Learning Methods Predict Discourse Segment Type in Biological Research Articles

  Cox, J., Harper, C. A. & de Waard, A., Jan 1 2018, Semantics, Analytics, Visualization - 3rd International Workshop, SAVE-SD 2017, and 4th International Workshop, SAVE-SD 2018, Revised Selected Papers. Osborne, F., Peroni, S., Vahdati, S. & González-Beltrán, A. (eds.). Springer Verlag, p. 95-109 15 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 10959 LNCS).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  • Discourse
  • Machine Learning
  • Predict
  • Machine learning
  • Feature Selection
  1 Scopus citations

• Personalized Medicine: Matching cancer drugs with mechanism

  Yuryev, A., Mar 18 2018.

  Research output: Contribution to conference › Paper › peer-review

  • Precision Medicine
  • Pharmaceutical Preparations
  • Neoplasms

• Pioneering Personalised Options for Cancer Patients

  Yuryev, A., Jun 1 2018

  Research output: Other contribution

  • Oncologists
  • Spouses
  • Neoplasms
  • Research Personnel
  • Therapeutics

• Poster - Improving research data inventory and discoverability with Data Monitor

  White, A., Zudilova-Seinstra, E. & Waard, A., 2018, Force 2018 .

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

• Prediction of Chemical Reactions Using Statistical Models of Chemical Knowledge

  Lapkin, A., 2018, (Accepted/In press) In: ChemRXiv.

  Research output: Contribution to journal › Article › peer-review

  • Chemical reactions
  • Statistical Models
  • Artificial intelligence

• PUBMET 2018 – 5th Conference on Scholarly Publishing in the Context of Open Science

  Malički, M., Sep 1 2018.

  Research output: Contribution to conference › Paper › peer-review

  • Plurality
  • Openness
  • Ethical Issues

• Ranking-based Method for News Stance Detection

  Zhang, Q., Yilmaz, E. & Liang, S., 2018, The Web Conference 2018 - Companion of the World Wide Web Conference, WWW 2018.

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review
  17 Scopus citations

• Roxie JOB

  Ukkingatti, J., 2018

  Research output: Non-textual form › Software

• Roxie Software

  Villanustre, F., Jun 10 2018

  Research output: Non-textual form › Software

  • protocols

• Solr Dictionary Annotator: SODA

  Pal, S., Jan 10 2018

  Research output: Non-textual form › Software

  • Glossaries
  • Set theory

• Spark-xml-utils

  McBeath, D., May 3 2018

  Research output: Non-textual form › Software

  • Functionality
  • Filter
  • Saxon

• The exploration of the chemical space and its three historical regimes

  Restrepo, G., 2018, In: PNAS.

  Research output: Contribution to journal › Article › peer-review

• The principles of tomorrow's university [version 1; referees: 2 approved]

  Katz, D. S., Allen, G., Barba, L. A., Berg, D. R., Bik, H., Boettiger, C., Borgman, C. L., Brown, C. T., Buck, S., Burd, R., de Waard, A., Eve, M. P., Granger, B. E., Greenberg, J., Howe, A., Howe, B., Khanna, M., Killeen, T. L., Mayernik, M., McKiernan, E. & 12 others, Mentzel, C., Merchant, N., Niemeyer, K. E., Noren, L., Nusser, S. M., Reed, D. A., Seidel, E., Smith, M., Spies, J. R., Turk, M., Van Horn, J. D. & Walsh, J., Jan 1 2018, In: F1000Research. 7, 1926.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Education
  • Launching
  • Students
  • Internet
  • Concretes
  2 Scopus citations

• Translatability of the S7A core battery respiratory safety pharmacology studies: Preclinical respiratory and related clinical adverse events

  Paglialunga, S., Morimoto, B. H., Clark, M. & Friedrichs, G. S., Sep 1 2018, In: Journal of Pharmacological and Toxicological Methods. 99, 106596.

  Research output: Contribution to journal › Article › peer-review

  • Pharmacology
  • Safety
  • Clinical Studies
  • Respiratory Insufficiency
  • Databases
  4 Scopus citations

• Understanding Cancer Processes in Pathway Studio

  Yuryev, A., Jun 1 2018

  Research output: Other contribution

  • Studios
  • Gene expression

• Use of internal testing data to help determine compensation for crowdsourcing tasks

  Harper, C., Oct 9 2018, CEUR Workshop Proceedings.

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  Open Access

  • Crowdsourcing
  • Compensation and Redress
  • Testing
  • Gages
  • Machine learning

• Using Data and ICT for Impact

  Veldhuizen, L., 2018.

  Research output: Contribution to conference › Paper › peer-review

  • Open Data
  • Sanders
  • Agriculture
  • Earth (planet)
• 2017

  5th World Conference on Research Integrity

  Seadle, M., May 1 2017.

  Research output: Contribution to conference › Paper › peer-review

  • Industrial research
  • Cosmetics
  • Chemical industry
  • Drug products
  • Profitability
  3 Scopus citations

• A brief history of Scopus: The world’s largest abstract and citation database of scientific literature

  Schotten, M., El Aisati, M., Meester, W. J. N., Steiginga, S. & Ross, C. A., Jan 1 2017, Research Analytics: Boosting University Productivity and Competitiveness through Scientometrics. CRC Press, p. 31-58 28 p.

  Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review

  • Literature
  • Databases
  • Bibliometrics
  • Patents
  • Congresses
  9 Scopus citations