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A big data approach to the concordance of the toxicity of pharmaceuticals in animals and humans

Clark, M. & Steger-Hartmann, T., Jul 1 2018, In : Regulatory Toxicology and Pharmacology. 96, p. 94-105 12 p.

Research output: Contribution to journal › Article

Open Access
31 Scopus citations

A computational study of the possible isomers and conformations of N-trifluoromethylformamide, CF3NHC(O)H, and N-hydroxymethylidenetrifluoromethylamine, CF3NC(H)OH

Madappat, K. V., Clark, M. & Thrasher, J. S., Jan 1 1993, In : Journal of Molecular Structure: THEOCHEM. 285, 1, p. 1-15 15 p.

Research output: Contribution to journal › Article

5 Scopus citations

A Concept Language Model for Ad-Hoc Search.

Zou, B., Lampos, V., Liang, S., Ren, Z., Yilmaz, E. & Cox, I., 2017, In : WWW '17 Companion Proceedings of the 26th International Conference on World Wide Web Companion. p. 885-886

Research output: Contribution to journal › Article

2 Scopus citations

A conversation with Eugene Kennedy

Gracy, K. N., Jan 1 2002, In : Biochemical and Biophysical Research Communications. 294, 3, p. 519-520 2 p.

Research output: Contribution to journal › Article

A conversation with John E. Walker

Noelle Gracy, K., Jan 1 2002, In : Biochemical and Biophysical Research Communications. 298, 1, p. 1-4 4 p.

Research output: Contribution to journal › Article

A conversation with Saul Roseman

Gracy, K. N., Jan 1 2003, In : Biochemical and Biophysical Research Communications. 300, 1, p. 5-8 4 p.

Research output: Contribution to journal › Article

3 Scopus citations

A conversation with Thomas D. Pollard

Noelle Gracy, K., Jan 1 2002, In : Biochemical and Biophysical Research Communications. 297, 1, p. 6-9 4 p.

Research output: Contribution to journal › Article

A conversation with Wan Kyoo Cho

Noelle Gracy, K., Jan 1 2002, In : Biochemical and Biophysical Research Communications. 297, 5, p. 1071-1074 4 p.

Research output: Contribution to journal › Article

An ab initio study of the possible isomers and conformations of N-(trifluoromethyl)fluoro methanimine, CF3NCHF

Clark, M. & Thrasher, J. S., Jan 1 1987, In : Journal of Molecular Structure: THEOCHEM. 153, 1-2, p. 67-74 8 p.

Research output: Contribution to journal › Article

1 Scopus citations

A parallel and distributed stochastic gradient descent implementation using commodity clusters

Kennedy, R., Dec 1 2019, In : Journal of Big Data. 6, 1, 16.

Research output: Contribution to journal › Article

Open Access
2 Scopus citations

Application of data mining and visualization techniques for the prediction of drug-induced nausea in man

Parkinson, J., Muthas, D., Clark, M., Boyer, S., Valentin, J. P. & Ewart, L., Mar 13 2012, In : Toxicological Sciences. 126, 1, p. 275-284 10 p.

Research output: Contribution to journal › Article

Open Access
18 Scopus citations

A standardized citation metrics author database annotated for scientific field

Ioannidis, J., Baas, J., Klavans, R. & Boyack, K., 2019, In : PLoS Biology.

Research output: Contribution to journal › Article

Open Access
24 Scopus citations

Automated detection of discourse segment and experimental types from the text of cancer pathway results sections

Burns, G. A. P. C., Dasigi, P., de Waard, A. & Hovy, E. H., Jan 1 2016, In : Database : the journal of biological databases and curation. 2016

Research output: Contribution to journal › Article

Open Access
8 Scopus citations

Automated knowledge Base Construction

de Rijke, M. & van Harmelen, F., Feb 18 2019, In : Archived.

Research output: Contribution to journal › Article

Automatic identification of relevant chemical compounds from patents

Akhondi, S. A., Rey, H., Schwörer, M., Maier, M., Toomey, J., Nau, H., Ilchmann, G., Sheehan, M., Irmer, M., Bobach, C., Doornenbal, M., Gregory, M. & Kors, J. A., Jan 1 2019, In : Database. 2019, baz001.

Research output: Contribution to journal › Article

Open Access
2 Scopus citations

Automation of route identification and optimisation based on data-mining and chemical intuition

Lapkin, A., May 1 2017, In : Faraday Discussions.

Research output: Contribution to journal › Article

11 Scopus citations

Challenges and Opportunities for detecting and measuring diffusion of scientific impact across heterogeneous altmetric sources

Davis, B., Hulpus, I. & Hayes, C., Aug 1 2017, In : Archived.

Research output: Contribution to journal › Article

Characterizing and predicting downloads in academic search

Li, X. & de Rijke, M., 2019, In : Information Processing and Management.

Research output: Contribution to journal › Article

4 Scopus citations

CiteScore metrics: Creating journal metrics from the Scopus citation index

James, C., Colledge, L., Meester, W., Azoulay, N. & Plume, A., Oct 1 2019, In : Learned Publishing. 32, 4, p. 367-374 8 p.

Research output: Contribution to journal › Article

4 Scopus citations

Coloring citations for scholars: investigating palettes

Di Iorio, A., Mar 1 2018, In : Archived.

Research output: Contribution to journal › Article

Comparative molecular field analysis (CoMFA). 2. Toward its use with 3D-structural databases

Clark, M., Cramer, R. D., Jones, D. M., Patterson, D. E. & Simeroth, P. E., Jan 1 1990, In : Tetrahedron Computer Methodology. 3, 1, p. 47-59 13 p.

Research output: Contribution to journal › Article

215 Scopus citations

Comparison of two article-level, field-independent citation metrics: Field-Weighted Citation Impact (FWCI) and Relative Citation Ratio (RCR)

Purkayastha, A., Palmaro, E., Falk-Krzesinski, H. J. & Baas, J., May 1 2019, In : Journal of Informetrics. 13, 2, p. 635-642 8 p.

Research output: Contribution to journal › Article

Open Access
4 Scopus citations

Connecting closed world research information systems through the linked open data web

Joerg, B., Ruiz-Rube, I., Sicilia, M. A., Dvoák, J., Jeffery, K., Hoellrigl, T., Rasmussen, H. S., Engfer, A., Vestdam, T. & Barriocanal, E. G., May 1 2012, In : International Journal of Software Engineering and Knowledge Engineering. 22, 3, p. 345-364 20 p.

Research output: Contribution to journal › Article

19 Scopus citations

Crystal and molecular structure of S-methyl(pentafluorosulfanyl)thiocarbamate

Bott, S. G., Clark, M., Thrasher, J. S. & Atwood, J. L., Apr 1 1987, In : Journal of Crystallographic and Spectroscopic Research. 17, 2, p. 187-196 10 p.

Research output: Contribution to journal › Article

3 Scopus citations

Data discovery paradigms: User requirements and recommendations for data repositories

Wu, M., Psomopoulos, F., de Waard, A. & Khalsa, S. J., Jan 1 2019, In : Data Science Journal. 18, 1, 3.

Research output: Contribution to journal › Article

Open Access
1 Scopus citations

Dest-ResNet: A Deep Spatiotemporal Residual Network for Hotspot Traffic Speed Prediction

Zhang, J. & Gao, Y., 2018, In : Journal of the ACM.

Research output: Contribution to journal › Article

2 Scopus citations

Developing Pathway Collection for Personalized Anti-cancer Therapy

Yuryev, A., Feb 1 2016, In : International Journal of Cancer and Clinical Research.

Research output: Contribution to journal › Article

Development and evaluation of an in silico model for hERG binding

Song, M. & Clark, M., Jan 1 2006, In : Journal of Chemical Information and Modeling. 46, 1, p. 392-400 9 p.

Research output: Contribution to journal › Article

102 Scopus citations

Discussion of "Statistical modelling of citation exchange between statistics journals" by Varin, Cattelan and Firth (2016).

Darroch, P. I., 2016, In : Journal of the Royal Statistical Society. Series A: Statistics in Society.

Research output: Contribution to journal › Article

Distantly supervised Web relation extraction for knowledge base population

Augenstein, I., Maynard, D. & Ciravegna, F., Jan 1 2016, In : Semantic Web. 7, 4, p. 335-349 15 p.

Research output: Contribution to journal › Article

Open Access
16 Scopus citations

Distributed similarity joins on big textual data: Toward a robust cost-based framework

Fier, F. & Freytag, J-C., Jun 1 2017, In : CEUR Workshop Proceedings.

Research output: Contribution to journal › Article

Do Topic Shift and Query Reformulation Patterns Correlate in Academic Search?

Li, X. & de Rijke, M., 2017, In : European Conference on Information Retrieval.

Research output: Contribution to journal › Article

4 Scopus citations

Dynamic enhancement of drug product labels to support drug safety, efficacy, and effectiveness

Boyce, R. D., Horn, J. R., Hassanzadeh, O., Waard, A. D., Schneider, J., Luciano, J. S., Rastegar-Mojarad, M. & Liakata, M., Jan 26 2013, In : Journal of Biomedical Semantics. 4, 1, 5.

Research output: Contribution to journal › Article

Open Access
12 Scopus citations

Eleven quick tips for finding research data

Khalsa, S. J., Michener, W., Psomopoulos, F. & Wu, M., Apr 1 2018, In : PLOS Computational Biology.

Research output: Contribution to journal › Article

Open Access
4 Scopus citations

Elsevier's approach to the bioCADDIE 2016 Dataset Retrieval Challenge

Scerri, A., Kuriakose, J., Deshmane, A. A., Stanger, M., Cotroneo, P., Moore, R., Naik, R. & de Waard, A., Jan 1 2017, In : Database : the journal of biological databases and curation. 2017

Research output: Contribution to journal › Article

Open Access
2 Scopus citations

Exploring Large Document Repositories with RDF Technology: The DOPE Project

Stuckenschmidt, H., Van Harmelen, F., De Waard, A., Tony, S., Bhogal, R., Van Buel, J., Crowlesmith, I., Fluit, C., Kampman, A., Broekstra, J. & Van Mulligen, E., Jan 1 2004, In : IEEE Intelligent Systems. 19, 3, p. 34-40 7 p.

Research output: Contribution to journal › Article

37 Scopus citations

Finding better active learners for faster literature reviews

Menzies, T., Jan 1 2018, In : Empirical Software Engineering.

Research output: Contribution to journal › Article

9 Scopus citations

Formalizing biomedical concepts from textual definitions

Petrova, A., Ma, Y., Tsatsaronis, G., Kissa, M., Distel, F., Baader, F. & Schroeder, M., Apr 2 2015, In : Journal of Biomedical Semantics. 6, 1, 22.

Research output: Contribution to journal › Article

Open Access
13 Scopus citations

Fragment-based computation of binding free energies by systematic sampling

Clark, M., Meshkat, S., Talbot, G. T., Carnevali, P. & Wiseman, J. S., Aug 24 2009, In : Journal of Chemical Information and Modeling. 49, 8, p. 1901-1913 13 p.

Research output: Contribution to journal › Article

30 Scopus citations

Fragment-based prediction of the clinical occurrence of long qt syndrome and torsade de pointes

Clark, M. & Wiseman, J. S., Nov 23 2009, In : Journal of Chemical Information and Modeling. 49, 11, p. 2617-2626 10 p.

Research output: Contribution to journal › Article

10 Scopus citations

From proteins to fairytales: Directions in semantic publishing

De Waard, A., Jul 26 2010, In : IEEE Intelligent Systems. 25, 2, p. 83-88 6 p., 5456415.

Research output: Contribution to journal › Article

22 Scopus citations

Generalized fragment-substructure based property prediction method

Clark, M., Jan 1 2005, In : Journal of Chemical Information and Modeling. 45, 1, p. 30-38 9 p.

Research output: Contribution to journal › Article

56 Scopus citations

Grand canonical free-energy calculations of protein - Ligand binding

Clark, M., Meshkat, S. & Wiseman, J. S., Apr 27 2009, In : Journal of Chemical Information and Modeling. 49, 4, p. 934-943 10 p.

Research output: Contribution to journal › Article

23 Scopus citations

Grand canonical Monte Carlo simulation of ligand - Protein binding

Clark, M., Guarnieri, F., Shkurko, I. & Wiseman, J., Jan 1 2006, In : Journal of Chemical Information and Modeling. 46, 1, p. 231-242 12 p.

Research output: Contribution to journal › Article

80 Scopus citations

Half a Century of Analysis of Instructions to Authors: Systematic Review

Malički, M., Jerončić, A., Bouter, L., Aalbersberg, IJ. J. & ter Riet, G., 2017, In : PEEREWIC.

Research output: Contribution to journal › Article

HPCC Benchmarking

Ghatpande, R., Feb 1 2019, In : Archived.

Research output: Contribution to journal › Article

Hydrogen bonding and cation radical formation of methyl 4-(N,N-dimethylamino)phenyl carbamate, DMAPCMe

Laidlaw, R. K., Miura, Y., Grant, J. L., Cooray, L., Clark, M., Kispert, L. D. & Metzger, R. M., Jan 1 1987, In : The Journal of Chemical Physics. 87, 8, p. 4967-4971 5 p.

Research output: Contribution to journal › Article

9 Scopus citations

Imidotetrafluorosulfur derivatives - synthesis, stereochemical rigidity and Ab initio results

Clark, M., Nielsen, J. B., Mauerman, A. A. & Thrasher, J. S., Jan 1 1987, In : Journal of Fluorine Chemistry. 35, 1, 1 p.

Research output: Contribution to journal › Article

Improving future research communication and e-scholarship: A summary of findings

Bourne, P. E., Clark, T., Dale, R., De Waard, A., Hermane, I., Hovyf, E. & Shottong, D., Feb 1 2012, In : Informatik-Spektrum. 35, 1, p. 56-58 3 p.

Research output: Contribution to journal › Article

1 Scopus citations

Indicators for the use of robotic labs in basic biomedical research: A literature analysis

Groth, P. & Cox, J., Jan 1 2017, In : PeerJ. 2017, 11, e3997.

Research output: Contribution to journal › Article

Open Access
3 Scopus citations