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• Abstract

  ChEMU shared task: chemical entity recognition and event extraction of chemical reactions from patents

  Thorne, C., Oct 9 2020.

  Research output: Contribution to conference › Abstract

  Open Access
• Article

  A big data approach to the concordance of the toxicity of pharmaceuticals in animals and humans

  Clark, M. & Steger-Hartmann, T., Jul 1 2018, In: Regulatory Toxicology and Pharmacology. 96, p. 94-105 12 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access
  53 Scopus citations

• Academic vs Biological Age in Research on Academic Careers: A Large-scale Study with Implications for Scientifically developing Systems

  Kwiek, M. & Roszka, W., 2021, In: ARXIV.

  Research output: Contribution to journal › Article

• A computational study of the possible isomers and conformations of N-trifluoromethylformamide, CF₃NHC(O)H, and N-hydroxymethylidenetrifluoromethylamine, CF₃NC(H)OH

  Madappat, K. V., Clark, M. & Thrasher, J. S., Jan 1 1993, In: Journal of Molecular Structure: THEOCHEM. 285, 1, p. 1-15 15 p.

  Research output: Contribution to journal › Article › peer-review
  5 Scopus citations

• A Concept Language Model for Ad-Hoc Search.

  Zou, B., Lampos, V., Liang, S., Ren, Z., Yilmaz, E. & Cox, I., 2017, In: WWW '17 Companion Proceedings of the 26th International Conference on World Wide Web Companion. p. 885-886

  Research output: Contribution to journal › Article › peer-review
  2 Scopus citations

• A conversation with Eugene Kennedy

  Gracy, K. N., Jan 1 2002, In: Biochemical and Biophysical Research Communications. 294, 3, p. 519-520 2 p.

  Research output: Contribution to journal › Article › peer-review

• A conversation with John E. Walker

  Noelle Gracy, K., Jan 1 2002, In: Biochemical and Biophysical Research Communications. 298, 1, p. 1-4 4 p.

  Research output: Contribution to journal › Article › peer-review

• A conversation with Saul Roseman

  Gracy, K. N., Jan 1 2003, In: Biochemical and Biophysical Research Communications. 300, 1, p. 5-8 4 p.

  Research output: Contribution to journal › Article › peer-review
  3 Scopus citations

• A conversation with Thomas D. Pollard

  Noelle Gracy, K., Jan 1 2002, In: Biochemical and Biophysical Research Communications. 297, 1, p. 6-9 4 p.

  Research output: Contribution to journal › Article › peer-review

• A conversation with Wan Kyoo Cho

  Noelle Gracy, K., Jan 1 2002, In: Biochemical and Biophysical Research Communications. 297, 5, p. 1071-1074 4 p.

  Research output: Contribution to journal › Article › peer-review

• A large-scale validation of the relationship between cross-disciplinary research and its uptake in policy-related documents, using the novel Overton altmetrics database

  Campbell, D., Pinheiro, H. & Vignola-Gagné, E., Jul 15 2021, In: The MIT Press Journals. 2, 2, p. 616-642 27 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

• An ab initio study of the possible isomers and conformations of N-(trifluoromethyl)fluoro methanimine, CF₃NCHF

  Clark, M. & Thrasher, J. S., Jan 1 1987, In: Journal of Molecular Structure: THEOCHEM. 153, 1-2, p. 67-74 8 p.

  Research output: Contribution to journal › Article › peer-review
  1 Scopus citations

• Análise massiva de dados na gestão pública: Uma proposta para identificação de outliers no cadastro de imóveis da prefeitura de São Paulo: Análise massiva de dados na gestão pública: Uma proposta para identificação de outliers no cadastro de imóveis da prefeitura de São Paulo

  Silva, L. F. C., Moraes, R. D. O., Watanuki, H. & da Silva, L. R., 2021, In: “Contribuições da Engenharia de Produção para a Gestão de Operações Energéticas Sustentáveis.

  Research output: Contribution to journal › Article › peer-review

• A parallel and distributed stochastic gradient descent implementation using commodity clusters

  Kennedy, R., Dec 1 2019, In: Journal of Big Data. 6, 1, 16.

  Research output: Contribution to journal › Article › peer-review

  Open Access
  5 Scopus citations

• Application of data mining and visualization techniques for the prediction of drug-induced nausea in man

  Parkinson, J., Muthas, D., Clark, M., Boyer, S., Valentin, J. P. & Ewart, L., Mar 13 2012, In: Toxicological Sciences. 126, 1, p. 275-284 10 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access
  19 Scopus citations

• A pre-trained Language Model for Chemical Patents

  He, J., Zhai, Z., Akhondi, S., Drukenbrodt, C., Thorne, C., Yoshikawa, H. & Verspoor, K., 2021, In: International Conference Recent Advances in Natural Language Processing, RANLP.

  Research output: Contribution to journal › Article › peer-review

• Argumentative practices in science, technology and innovation policy: The case of clinician-scientists and translational research

  Vignola-Gagné, E., Feb 2014, In: Science and Public Policy. 41, 1, p. 94-106 13 p., sct039.

  Research output: Contribution to journal › Article › peer-review
  13 Scopus citations

• Article-level classification of scientific publications: A comparison of deep learning, direct citation and bibliographic coupling

  Rivest, M., Vignola-Gagné, E. & Archambault, É., May 1 2021, In: PLoS ONE. 16, 5, p. e0251493 e0251493.

  Research output: Contribution to journal › Article › peer-review

  Open Access

• A standardized citation metrics author database annotated for scientific field

  Ioannidis, J., Baas, J., Klavans, R. & Boyack, K., 2019, In: PLoS Biology.

  Research output: Contribution to journal › Article › peer-review

  Open Access
  59 Scopus citations

• Automated detection of discourse segment and experimental types from the text of cancer pathway results sections

  Burns, G. A. P. C., Dasigi, P., de Waard, A. & Hovy, E. H., Jan 1 2016, In: Database : the journal of biological databases and curation. 2016, baw122.

  Research output: Contribution to journal › Article › peer-review

  Open Access
  10 Scopus citations

• Automated extraction of potential migraine biomarkers using a semantic graph

  Vlietstra, W. J., Zielman, R., van Dongen, R. M., Schultes, E. A., Wiesman, F., Vos, R., van Mulligen, E. M. & Kors, J. A., Jul 2017, In: Journal of Biomedical Informatics. 71, p. 178-189 12 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access
  18 Scopus citations

• Automated knowledge Base Construction

  de Rijke, M. & van Harmelen, F., Feb 18 2019, In: Archived.

  Research output: Contribution to journal › Article › peer-review
  1 Scopus citations

• Automatic identification of relevant chemical compounds from patents

  Akhondi, S. A., Rey, H., Schwörer, M., Maier, M., Toomey, J., Nau, H., Ilchmann, G., Sheehan, M., Irmer, M., Bobach, C., Doornenbal, M., Gregory, M. & Kors, J. A., Jan 1 2019, In: Database. 2019, baz001.

  Research output: Contribution to journal › Article › peer-review

  Open Access
  8 Scopus citations

• Automation of route identification and optimisation based on data-mining and chemical intuition

  Lapkin, A., May 1 2017, In: Faraday Discussions.

  Research output: Contribution to journal › Article › peer-review
  13 Scopus citations

• Benchmarking scientific output in the social sciences and humanities: The limits of existing databases

  Archambault, É., Vignola-Gagné, É., Côté, G., Larivière, V. & Gingrasb, Y., Dec 2006, In: Scientometrics. 68, 3, p. 329-342 14 p.

  Research output: Contribution to journal › Article › peer-review
  259 Scopus citations

• Candidate prioritization for low-abundant differentially expressed proteins in 2D-DIGE datasets

  Nandal, U. K., Vlietstra, W. J., Byrman, C., Jeeninga, R. E., Ringrose, J. H., van Kampen, A. H. C., Speijer, D. & Moerland, P. D., Jan 28 2015, In: BMC Bioinformatics. 16, 1, 25.

  Research output: Contribution to journal › Article › peer-review

  Open Access
  1 Scopus citations

• Challenges and Opportunities for detecting and measuring diffusion of scientific impact across heterogeneous altmetric sources

  Davis, B., Hulpus, I. & Hayes, C., Aug 1 2017, In: Archived.

  Research output: Contribution to journal › Article › peer-review

• Characterizing and predicting downloads in academic search

  Li, X. & de Rijke, M., May 2019, In: Information Processing and Management. 56, 3, p. 394-407 14 p.

  Research output: Contribution to journal › Article › peer-review
  4 Scopus citations

• ChemTables: A Dataset for Semantic Classification of Tables in Chemical Patents.

  Zhai, Z., Drukenbrodt, C., Thorne, C., Akhondi, S., Nguyen, D. Q., Cohn, T. & Verspoor, K., 2021, In: Research Square preprint.

  Research output: Contribution to journal › Article › peer-review

  Open Access

• Citation-based metrics are appropriate tools in journal assessment provided that they are accurate and used in an informed way

  Moed, H. F., Colledge, L., Reedijk, J., Moya-Anegon, F., Guerrero-Bote, V., Plume, A. & Amin, M., Aug 2012, In: Scientometrics. 92, 2, p. 367-376 10 p.

  Research output: Contribution to journal › Article › peer-review
  48 Scopus citations

• CiteScore metrics: Creating journal metrics from the Scopus citation index

  James, C., Colledge, L., Meester, W., Azoulay, N. & Plume, A., Oct 1 2019, In: Learned Publishing. 32, 4, p. 367-374 8 p.

  Research output: Contribution to journal › Article › peer-review
  15 Scopus citations

• CiteScore metrics are suitable to address different situations – A case study

  Colledge, L., James, C., Azoulay, N., Meester, W. & Plume, A., 2017, In: European Science Editing. 43, 2, p. 27-31 5 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access
  13 Scopus citations

• Coloring citations for scholars: investigating palettes

  Di Iorio, A., Mar 1 2018, In: Archived.

  Research output: Contribution to journal › Article › peer-review

• Comparative molecular field analysis (CoMFA). 2. Toward its use with 3D-structural databases

  Clark, M., Cramer, R. D., Jones, D. M., Patterson, D. E. & Simeroth, P. E., Jan 1 1990, In: Tetrahedron Computer Methodology. 3, 1, p. 47-59 13 p.

  Research output: Contribution to journal › Article › peer-review
  224 Scopus citations

• Comparative ultrastructural localization of the NMDAR1 glutamate receptor in the rat basolateral amygdala and bed nucleus of the stria terminalis

  Gracy, K. N. & Pickel, V. M., Nov 6 1995, In: Journal of Comparative Neurology. 362, 1, p. 71-85 15 p.

  Research output: Contribution to journal › Article › peer-review
  72 Scopus citations

• Comparison of two article-level, field-independent citation metrics: Field-Weighted Citation Impact (FWCI) and Relative Citation Ratio (RCR)

  Purkayastha, A., Palmaro, E., Falk-Krzesinski, H. J. & Baas, J., May 1 2019, In: Journal of Informetrics. 13, 2, p. 635-642 8 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access
  18 Scopus citations

• Compendiumdb: An R package for retrieval and storage of functional genomics data

  Nandal, U. K., Van Kampen, A. H. C. & Moerland, P. D., Sep 15 2016, In: Bioinformatics. 32, 18, p. 2856-2857 2 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access
  3 Scopus citations

• Complex Query Answering with Neural Link Predictors

  Daza, D., Cochez, M., Arakelyan, E. & Minervini, P., 2021, In: ARXIV.

  Research output: Contribution to journal › Article

  Open Access

• Connecting closed world research information systems through the linked open data web

  Joerg, B., Ruiz-Rube, I., Sicilia, M. A., Dvoák, J., Jeffery, K., Hoellrigl, T., Rasmussen, H. S., Engfer, A., Vestdam, T. & Barriocanal, E. G., May 1 2012, In: International Journal of Software Engineering and Knowledge Engineering. 22, 3, p. 345-364 20 p.

  Research output: Contribution to journal › Article › peer-review
  19 Scopus citations

• Converging Interests: Chemoinformatics, History, and Bibliometrics

  Zhao, W., Korobskiy, K., Chandrasekharan, S., Merz, K. & Chacko, G., 2020, In: Journal of Chemical Information and Modeling.

  Research output: Contribution to journal › Article › peer-review

• Co-occurrence of Cell Lines, Basal Media and Supplementation in the Biomedical Research Literature

  Cox, J., McBeath, D., Harper, C. A. & Daniel, R., Aug 1 2020, In: Journal of Data and Information Science. 5, 3, p. 161-177 17 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access
  1 Scopus citations

• CORA: A Deep Active Learning Covid-19 Relevancy Algorithm to Identify Core Scientific Articles

  Afzal, Z., Yadav, V., Fedorova, O., Kandala, V., van de Loo, J., Akhondi, S. & Coupet, P., Nov 29 2020, In: EMNLP2020.

  Research output: Contribution to journal › Article › peer-review

  Open Access

• COVID19 Disease Map, a computational knowledge repository of virus–host interaction mechanisms

  the COVID-19 Disease Map Community, Oct 2021, In: Molecular Systems Biology. 17, 10, p. e10387 e10387.

  Research output: Contribution to journal › Article › peer-review

  Open Access

• Crystal and molecular structure of S-methyl(pentafluorosulfanyl)thiocarbamate

  Bott, S. G., Clark, M., Thrasher, J. S. & Atwood, J. L., Apr 1 1987, In: Journal of Crystallographic and Spectroscopic Research. 17, 2, p. 187-196 10 p.

  Research output: Contribution to journal › Article › peer-review
  3 Scopus citations

• CyclinPred: A SVM-based method for predicting cyclin protein sequences

  Kalita, M. K., Nandal, U. K., Pattnaik, A., Sivalingam, A., Ramasamy, G., Kumar, M., Raghava, G. P. S. & Gupta, D., Jul 2 2008, In: PLoS ONE. 3, 7, e2605.

  Research output: Contribution to journal › Article › peer-review

  Open Access
  23 Scopus citations

• Data discovery paradigms: User requirements and recommendations for data repositories

  Wu, M., Psomopoulos, F., de Waard, A. & Khalsa, S. J., Jan 1 2019, In: Data Science Journal. 18, 1, 3.

  Research output: Contribution to journal › Article › peer-review

  Open Access
  4 Scopus citations

• Data-driven classification of the certainty of scholarly assertions

  Prieto, M., Deus, H., de Waard, A., Schultes, E., García-Jiménez, B. & Wilkinson, M. D., 2020, In: PeerJ. 8, 4, p. e8871 e8871.

  Research output: Contribution to journal › Article › peer-review

  Open Access

• Delayed Recognition; the Co-citation Perspective

  Zhao, W., Korobskiy, K. & Chacko, G., 2020, In: Frontiers in Research metrics and Analytics.

  Research output: Contribution to journal › Article › peer-review

• Dengue in travellers: Applicability of the 1975-1997 and the 2009 WHO classification system of dengue fever

  Wieten, R. W., Vlietstra, W., Goorhuis, A., van Vugt, M., Hodiamont, C. J., Leenstra, T., de Vries, P. J., Janssen, S., van Thiel, P. P., Stijnis, K. & Grobusch, M. P., Aug 2012, In: Tropical Medicine and International Health. 17, 8, p. 1023-1030 8 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access
  12 Scopus citations

• Dest-ResNet: A Deep Spatiotemporal Residual Network for Hotspot Traffic Speed Prediction

  Zhang, J. & Gao, Y., 2018, In: Journal of the ACM.

  Research output: Contribution to journal › Article › peer-review
  12 Scopus citations