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• 1987

  An ab initio study of the possible isomers and conformations of N-(trifluoromethyl)fluoro methanimine, CF₃NCHF

  Clark, M. & Thrasher, J. S., Jan 1 1987, In: Journal of Molecular Structure: THEOCHEM. 153, 1-2, p. 67-74 8 p.

  Research output: Contribution to journal › Article › peer-review
  1 Scopus citations

• Crystal and molecular structure of S-methyl(pentafluorosulfanyl)thiocarbamate

  Bott, S. G., Clark, M., Thrasher, J. S. & Atwood, J. L., Apr 1 1987, In: Journal of Crystallographic and Spectroscopic Research. 17, 2, p. 187-196 10 p.

  Research output: Contribution to journal › Article › peer-review
  3 Scopus citations

• Hydrogen bonding and cation radical formation of methyl 4-(N,N-dimethylamino)phenyl carbamate, DMAPCMe

  Laidlaw, R. K., Miura, Y., Grant, J. L., Cooray, L., Clark, M., Kispert, L. D. & Metzger, R. M., Jan 1 1987, In: The Journal of Chemical Physics. 87, 8, p. 4967-4971 5 p.

  Research output: Contribution to journal › Article › peer-review
  9 Scopus citations

• Imidotetrafluorosulfur derivatives - synthesis, stereochemical rigidity and Ab initio results

  Clark, M., Nielsen, J. B., Mauerman, A. A. & Thrasher, J. S., Jan 1 1987, In: Journal of Fluorine Chemistry. 35, 1, p. 119 1 p.

  Research output: Contribution to journal › Article › peer-review

• New amines and hydrazines with pentafluorochalcogen substituents

  Nielsen, J. B., Clark, M., Mauerman, A. A. & Thrasher, J. S., Jan 1 1987, In: Journal of Fluorine Chemistry. 35, 1, p. 116 1 p.

  Research output: Contribution to journal › Article › peer-review
• 1988

  Reactions of tellurium chloride pentafluoride, TeF₅Cl, with nitrogen nucleophiles. Preparation and characterization of the adducts (TeF₄)₂·NR₂Cl, where R = CH₃, C₂H₅¹ 1 Presented in part at the 11th International Symposium on Fluorine Chemistry, East Berlin ...

  Thrasher, J. S., Clark, M. & Morken, P. A., Jan 1 1988, In: Journal of Fluorine Chemistry. 39, 2, p. 235-243 9 p.

  Research output: Contribution to journal › Article › peer-review
  1 Scopus citations
• 1989

  Validation of the general purpose tripos 5.2 force field

  Clark, M., Cramer, R. D. & Van Opdenbosch, N., Jan 1 1989, In: Journal of Computational Chemistry. 10, 8, p. 982-1012 31 p.

  Research output: Contribution to journal › Article › peer-review
  2646 Scopus citations
• 1990

  Comparative molecular field analysis (CoMFA). 2. Toward its use with 3D-structural databases

  Clark, M., Cramer, R. D., Jones, D. M., Patterson, D. E. & Simeroth, P. E., Jan 1 1990, In: Tetrahedron Computer Methodology. 3, 1, p. 47-59 13 p.

  Research output: Contribution to journal › Article › peer-review
  224 Scopus citations

• LAOCOON PC: NMR simulation on a personal computer

  Clark, M. & Thrasher, J. S., Dec 1 1990, In: Journal of Chemical Education. 67, 3, p. 235-236 2 p.

  Research output: Contribution to journal › Review article › peer-review
  17 Scopus citations

• The accumulation of oxidized isoforms of chicken triosephosphate isomerase during aging and development

  Noelle Gracy, K., Tang, C. Y., Ümit Yüksel, K. & Gracy, R. W., Nov 1990, In: Mechanisms of Ageing and Development. 56, 2, p. 179-186 8 p.

  Research output: Contribution to journal › Article › peer-review
  12 Scopus citations
• 1993

  A computational study of the possible isomers and conformations of N-trifluoromethylformamide, CF₃NHC(O)H, and N-hydroxymethylidenetrifluoromethylamine, CF₃NC(H)OH

  Madappat, K. V., Clark, M. & Thrasher, J. S., Jan 1 1993, In: Journal of Molecular Structure: THEOCHEM. 285, 1, p. 1-15 15 p.

  Research output: Contribution to journal › Article › peer-review
  5 Scopus citations

• The Probability of Chance Correlation Using Partial Least Squares (PLS)

  Clark, M. & Cramer, R. D., Jan 1 1993, In: Quantitative Structure‐Activity Relationships. 12, 2, p. 137-145 9 p.

  Research output: Contribution to journal › Article › peer-review
  287 Scopus citations
• 1995

  Comparative ultrastructural localization of the NMDAR1 glutamate receptor in the rat basolateral amygdala and bed nucleus of the stria terminalis

  Gracy, K. N. & Pickel, V. M., Nov 6 1995, In: Journal of Comparative Neurology. 362, 1, p. 71-85 15 p.

  Research output: Contribution to journal › Article › peer-review
  72 Scopus citations

• Dynorphin‐immunoreactive neurons in the rat nucleus accumbens: Ultrastructure and synaptic input from terminals containing substance P and/or dynorphin

  van Bockstaele, E. J., Gracy, K. N. & Pickel, V. M., Jan 2 1995, In: Journal of Comparative Neurology. 351, 1, p. 117-133 17 p.

  Research output: Contribution to journal › Article › peer-review
  34 Scopus citations
• 1996

  Ultrastructural immunocytochemical localization of the N-methyl-D-aspartate receptor and tyrosine hydroxylase in the shell of the rat nucleus accumbens

  Gracy, K. N. & Pickel, V. M., Nov 11 1996, In: Brain Research. 739, 1-2, p. 169-181 13 p.

  Research output: Contribution to journal › Article › peer-review
  97 Scopus citations
• 1997

  Detection of delta opioid receptor and N-methyl-D-aspartate receptor- like immunoreactivity in retinoic acid-differentiated neuroblastoma x glioma (NG108-15) cells

  Beczkowska, I. W., Gracy, K. N., Pickel, V. M. & Inturrisi, C. E., Jan 1 1997, In: Journal of Neuroscience Research. 47, 1, p. 83-89 7 p.

  Research output: Contribution to journal › Article › peer-review
  10 Scopus citations

• Dual ultrastructural localization of μ-opioid receptors and NMDA-type glutamate receptors in the shell of the rat nucleus accumbens

  Gracy, K. N., Svingos, A. L. & Pickel, V. M., 1997, In: Journal of Neuroscience. 17, 12, p. 4839-4848 10 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access
  107 Scopus citations

• Inducible expression of N-methyl-D-aspartate receptor, and delta and mu opioid receptor messenger RNAs and protein in the NT2-N human cell line

  Beczkowska, I. W., Gracy, K. N., Pickel, V. M. & Inturrisi, C. E., May 26 1997, In: Neuroscience. 79, 3, p. 855-862 8 p.

  Research output: Contribution to journal › Article › peer-review
  15 Scopus citations

• Ultrastructural localization and comparative distribution of nitric oxide synthase and N-methyl-D-aspartate receptors in the shell of the rat nucleus accumbens

  Gracy, K. N. & Pickel, V. M., Feb 7 1997, In: Brain Research. 747, 2, p. 259-272 14 p.

  Research output: Contribution to journal › Article › peer-review
  68 Scopus citations
• 1998

  Erratum: Ultrastructural localization and comparative distribution of nitric oxide synthase and N-methyl-D-aspartate receptors in the shell of the rat nucleus accumbens (Brain Research (1997) 747 (259-272))

  Gracy, K. N. & Pickel, V. M., Jun 15 1998, In: Brain Research. 796, 1-2, p. 332 1 p.

  Research output: Contribution to journal › Comment/debate
• 1999

  N-methyl-D-aspartate receptor 1 in the caudate-putamen nucleus: Ultrastructural localization and co-expression with sorcin, a 22,000 mol. wt calcium binding protein

  Gracy, K. N., Clarke, C. L., Meyers, M. B. & Pickel, V. M., 1999, In: Neuroscience. 90, 1, p. 107-117 11 p.

  Research output: Contribution to journal › Article › peer-review
  26 Scopus citations

• μ-Opioid and NMDA-type glutamate receptors are often colocalized in spiny neurons within patches of the caudate-putamen nucleus

  Wang, H., Gracy, K. N. & Pickel, V. M., Sep 13 1999, In: Journal of Comparative Neurology. 412, 1, p. 132-146 15 p.

  Research output: Contribution to journal › Article › peer-review
  56 Scopus citations
• 2000

  Heroin-specific stimuli reinstate operant heroin-seeking behavior in rats after prolonged extinction

  Gracy, K. N., Dankiewicz, L. A., Weiss, F. & Koob, G. F., Mar 2000, In: Pharmacology Biochemistry and Behavior. 65, 3, p. 489-494 6 p.

  Research output: Contribution to journal › Article › peer-review
  48 Scopus citations

• Microinjections of an opiate receptor antagonist into the bed nucleus of the stria terminalis suppress heroin self-administration in dependent rats

  Walker, J. R., Ahmed, S. H., Gracy, K. N. & Koob, G. F., Jan 31 2000, In: Brain Research. 854, 1-2, p. 85-92 8 p.

  Research output: Contribution to journal › Article › peer-review
  60 Scopus citations

• Ultrastructural localization of nitrotyrosine within the caudate-putamen nucleus and the globus pallidus of normal rat brain

  Bolan, E. A., Noelle Gracy, K., Chan, J., Trifiletti, R. R. & Pickel, V. M., Jul 1 2000, In: Journal of Neuroscience. 20, 13, p. 4798-4808 11 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access
  38 Scopus citations
• 2001

  Opiate withdrawal-induced Fos immunoreactivity in the rat extended amygdala parallels the development of conditioned place aversion

  Gracy, K. N., Dankiewicz, L. A. & Koob, G. F., 2001, In: Neuropsychopharmacology. 24, 2, p. 152-160 9 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access
  104 Scopus citations
• 2002

  A conversation with Eugene Kennedy

  Gracy, K. N., Jan 1 2002, In: Biochemical and Biophysical Research Communications. 294, 3, p. 519-520 2 p.

  Research output: Contribution to journal › Article › peer-review

• A conversation with Frank Westheimer

  Noelle Gracy, K., Jan 1 2002, In: Biochemical and Biophysical Research Communications. 296, 1, p. 5-7 3 p.

  Research output: Contribution to journal › Editorial

• A conversation with John E. Walker

  Noelle Gracy, K., Jan 1 2002, In: Biochemical and Biophysical Research Communications. 298, 1, p. 1-4 4 p.

  Research output: Contribution to journal › Article › peer-review

• A conversation with Thomas D. Pollard

  Noelle Gracy, K., Jan 1 2002, In: Biochemical and Biophysical Research Communications. 297, 1, p. 6-9 4 p.

  Research output: Contribution to journal › Article › peer-review

• A conversation with Wan Kyoo Cho

  Noelle Gracy, K., Jan 1 2002, In: Biochemical and Biophysical Research Communications. 297, 5, p. 1071-1074 4 p.

  Research output: Contribution to journal › Article › peer-review
• 2003

  A conversation with Saul Roseman

  Gracy, K. N., Jan 1 2003, In: Biochemical and Biophysical Research Communications. 300, 1, p. 5-8 4 p.

  Research output: Contribution to journal › Article › peer-review
  3 Scopus citations
• 2004

  A topic-based browser for large online resources

  Stuckenschmidt, H., De Waard, A., Bhogal, R., Fluit, C., Kampman, A., Van Buel, J., Van Mulligen, E., Broekstra, J., Crowlesmith, I., Van Harmelen, P. & Scerri, T., Dec 1 2004, In: Lecture Notes in Artificial Intelligence (Subseries of Lecture Notes in Computer Science). 3257, p. 433-448 16 p.

  Research output: Contribution to journal › Conference article › peer-review
  6 Scopus citations

• Exploring Large Document Repositories with RDF Technology: The DOPE Project

  Stuckenschmidt, H., Van Harmelen, F., De Waard, A., Tony, S., Bhogal, R., Van Buel, J., Crowlesmith, I., Fluit, C., Kampman, A., Broekstra, J. & Van Mulligen, E., Jan 1 2004, In: IEEE Intelligent Systems. 19, 3, p. 34-40 7 p.

  Research output: Contribution to journal › Article › peer-review
  37 Scopus citations
• 2005

  Generalized fragment-substructure based property prediction method

  Clark, M., Jan 1 2005, In: Journal of Chemical Information and Modeling. 45, 1, p. 30-38 9 p.

  Research output: Contribution to journal › Article › peer-review
  56 Scopus citations
• 2006

  Benchmarking scientific output in the social sciences and humanities: The limits of existing databases

  Archambault, É., Vignola-Gagné, É., Côté, G., Larivière, V. & Gingrasb, Y., Dec 2006, In: Scientometrics. 68, 3, p. 329-342 14 p.

  Research output: Contribution to journal › Article › peer-review
  259 Scopus citations

• Development and evaluation of an in silico model for hERG binding

  Song, M. & Clark, M., Jan 1 2006, In: Journal of Chemical Information and Modeling. 46, 1, p. 392-400 9 p.

  Research output: Contribution to journal › Article › peer-review
  105 Scopus citations

• Grand canonical Monte Carlo simulation of ligand - Protein binding

  Clark, M., Guarnieri, F., Shkurko, I. & Wiseman, J., Jan 1 2006, In: Journal of Chemical Information and Modeling. 46, 1, p. 231-242 12 p.

  Research output: Contribution to journal › Article › peer-review
  80 Scopus citations

• The ABCDE format enabling semantic conference proceedings

  De Waard, A. & Tel, G., Dec 1 2006, In: CEUR Workshop Proceedings. 206, p. 97-108 12 p.

  Research output: Contribution to journal › Conference article › peer-review

• The place of serials in referencing practices: Comparing natural sciences and engineering with social sciences and humanities

  Larivière, V., Archambault, É., Gingras, Y. & Vignola-Gagné, É., Jun 2006, In: Journal of the American Society for Information Science and Technology. 57, 8, p. 997-1004 8 p.

  Research output: Contribution to journal › Article › peer-review
  164 Scopus citations
• 2007

  A pragmatic structure for research articles

  De Waard, A., Dec 1 2007, Proceedings of the 2nd International Conference on the Pragmatic Web: "Building Common Ground on the Web", ICPW '07. p. 83-89 7 p. (ACM International Conference Proceeding Series; vol. 280).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review
  8 Scopus citations

• Do open access articles have greater citation impact?. A critical review of the literature

  Craig, I. D., Plume, A. M., McVeigh, M. E., Pringle, J. & Amin, M., Jul 2007, In: Journal of Informetrics. 1, 3, p. 239-248 10 p.

  Research output: Contribution to journal › Review article › peer-review
  214 Scopus citations

• Use Case: Drug Ontology Project for Elsevier (DOPE)

  de Waard, A., van Harmelen, F. & Fluit, C., Jul 2007

  Research output: Other contribution
• 2008

  CyclinPred: A SVM-based method for predicting cyclin protein sequences

  Kalita, M. K., Nandal, U. K., Pattnaik, A., Sivalingam, A., Ramasamy, G., Kumar, M., Raghava, G. P. S. & Gupta, D., Jul 2 2008, In: PLoS ONE. 3, 7, e2605.

  Research output: Contribution to journal › Article › peer-review

  Open Access
  23 Scopus citations

• Modeling scientific research articles - Shifting perspectives and persistent issues

  De Waard, A. & Kircz, J., Dec 1 2008, Open Scholarship: Authority, Community, and Sustainability in the Age of Web 2.0 - Proceedings of the 12th International Conference on Electronic Publishing, ELPUB 2008. p. 234-245 12 p. (Open Scholarship: Authority, Community, and Sustainability in the Age of Web 2.0 - Proceedings of the 12th International Conference on Electronic Publishing, ELPUB 2008).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

  10 Scopus citations

• Phylogenomic and functional analysis of pterin-4a-carbinolamine dehydratase family (COG2154) proteins in plants and microorganisms

  Naponelli, V., Noiriel, A., Ziemak, M. J., Beverley, S. M., Lye, L. F., Plume, A. M., Botella, J. R., Loizeau, K., Ravanel, S., Rébeillé, F., De Crécy-Lagard, V. & Hanson, A. D., Apr 2008, In: Plant Physiology. 146, 4, p. 1515-1527 13 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access
  27 Scopus citations
• 2009

  A Grammar of Bantawa: Grammar, paradigm tables, glossary and texts of a Rai language of Eastern Nepal

  Doornenbal, M., Nov 9 2009, Utrecht: LOT Publications. 513 p.

  Research output: Book/Report › Book › peer-review

  Open Access
  10 Scopus citations

• A short survey of discourse representation models

  Groza, T., Handschuh, S., Clark, T., Shum, S. B. & De Waard, A., Dec 1 2009, In: CEUR Workshop Proceedings. 523

  Research output: Contribution to journal › Conference article › peer-review

  1 Scopus citations

• Developing technologies in biodefense research: Computational drug design

  Clark, M., Meshkat, S., Talbot, G., Konteatis, Z., Ludington, J., Zou, J., Freedman, S. J. & Wiseman, J. S., Jun 1 2009, In: Drug Development Research. 70, 4, p. 279-287 9 p.

  Research output: Contribution to journal › Review article › peer-review
  3 Scopus citations

• EU policies in personalized medicine-related technologies

  Gaisser, S., Vignola-Gagné, E., Hüsing, B., Enzing, C. & van der Valk, T., 2009, In: Personalized Medicine. 6, 1, p. 93-102 10 p.

  Research output: Contribution to journal › Article › peer-review
  7 Scopus citations