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• 2024

  The silver lining of COVID-19 restrictions: research output of academics under lockdown

  Mehmani, B., Garcia-Costa, D., Grimaldo, F., Bravo, G. & Squazzoni, F., Jan 24 2024, In: Scientometrics.

  Research output: Contribution to journal › Article › peer-review

• Towards the 4th generation university: a collaboration between Elsevier and TU Eindhoven

  Dumoulin, M. & Malkov, D., Apr 23 2024, In: SSRN.

  Research output: Contribution to journal › Article › peer-review

• Towards the 4th generation university: a collaboration between Elsevier and TU Eindhoven

  Malkov, D. & Dumoulin, M., Apr 23 2024

  Research output: Other contribution › peer-review
• 2023

  Adapting Neural Link Predictors for Data-Efficient Complex Query Answering

  Arakelyan, E., Minervini, P., Daza, D., Cochez, M. & Augenstein, I., Jul 1 2023, ArXiv. New Orleans: ArXiv.org

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

• A knowledge graph approach to predict and interpret disease-causing gene interactions

  Renaux, A., Terwagne, C., Cochez, M., Tiddi, I., Nowé, A. & Lenaerts, T., 2023, In: BMC Bioinformatics. 24, 1, p. 324 1 p.

  Research output: Contribution to journal › Article › peer-review

• A Machine With Human-Like Memory Systems

  Kim, T., Cochez, M., Francois-Lavet, V., Neerincx, M. & Vossen, P., 2023, arXiv preprint arXiv:2204.01611.

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

• Annotating Research Infrastructure in Scientific Papers: An NLP-driven Approach

  Tabatabaei, S. A., Cheirmpos, G., Doornenbal, M., Zigoni, A., Moore, V. & Tsatsaronis, G., Jul 2023.

  Research output: Contribution to conference › Paper › peer-review

• Approximate Answering of Graph Queries

  Cochez, M., Alivanistos, D., Arakelyan, E., Berrendorf, M., Daza, D., Galkin, M., Minervini, P., Niepert, M. & Ren, H., 2023, Compendium of Neurosymbolic Artificial Intelligence. Hitzler, P., Sarker, M. K. & Eberhart, A. (eds.). IOS Press, Vol. 369. p. 373-386 14 p. (Frontiers in Artificial Intelligence and Applications).

  Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review

• Benchmarking Named Entity Recognition Approaches for Extracting Research Infrastructure Information from Text

  Cheirmpos, G. & Tabatabaei, S. A., 2023, Benchmarking Named Entity Recognition Approaches for Extracting Research Infrastructure Information from Text.

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

• Bibliometrics Methods in Detecting Citations to Questionable Journals

  Barrantes, B. S. L., Dalton, S. & Andre, D., 2023, In: Journal of Academic Librarianship.

  Research output: Contribution to journal › Article › peer-review

  Open Access

• BioBLP: a modular framework for learning on multimodal biomedical knowledge graphs

  Daza, D., Alivanistos, D., Mitra, P., Pijnenburg, T., Cochez, M. & Groth, P., Dec 1 2023, In: Journal of Biomedical Semantics. 14, 1, p. 20 1 p.

  Research output: Contribution to journal › Article › peer-review

• Descriptive Comparison of Visual Ontology Change Summarisation Methods

  Chung, K., Pernisch, R. & Schlobach, S., 2023, The Semantic Web: ESWC 2023 Satellite Events. Pesquita, C., Skaf-Molli, H., Efthymiou, V., Kirrane, S., Ngonga, A., Collarana, D., Cerqueira, R., Alam, M., Trojahn, C. & Hertling, S. (eds.). Cham: Springer Nature, Vol. 13998. p. 54-58 5 p.

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

• Does Chinese Research Hinge on US Coauthors ? Evidence from the China Initiative

  Aghion, P., Antonin, C., Paluskiewicz, L., Stromberg, D., Sun, X., Wargon, R. & Westin, K., 2023.

  Research output: Working paper

• Do you catch my drift? On the usage of embedding methods to measure concept shift in knowledge graphs

  Verkijk, S., Roothaert, R., Pernisch, R. & Schlobach, S., Dec 1 2023, Proceedings of the 12th Knowledge Capture Conference 2023. New York, NY, USA: Association for Computing Machinery (ACM), p. 70-74 5 p. (K-CAP '23).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

• Explainable AI for Bioinformatics: Methods, Tools and Applications

  Karim, M. R., Islam, T., Shajalal, M., Beyan, O., Lange, C., Cochez, M., Rebholz-Schuhmann, D. & Decker, S., Oct 1 2023, In: Briefings in Bioinformatics. 24, 5

  Research output: Contribution to journal › Article › peer-review

• Extending Label Aggregation Models with a Gaussian Process to Denoise Crowdsourcing Labels

  Li, D. & De Rijke, M., 2023.

  Research output: Contribution to conference › Paper › peer-review

• Focused Contrastive Loss for Classification With Pre-Trained Language Models

  He, J., Li, Y., Zhai, Z., Fang, B., Thorne, C., Druckenbrodt, C., Akhondi, S. & Verspoor, K., Nov 3 2023, In: IEEE Transactions on Knowledge and Data Engineering.

  Research output: Contribution to journal › Article › peer-review

  Open Access

• How Does Knowledge Evolve in Open Knowledge Graphs?

  Polleres, A., Pernisch, R., Bonifati, A., Dell'Aglio, D., Dobriy, D., Dumbrava, S., Etcheverry, L., Ferranti, N., Hose, K., Jiménez-Ruiz, E., Lissandrini, M., Scherp, A., Tommasini, R. & Wachs, J., 2023, In: Transactions on Graph Data and Knowledge.

  Research output: Contribution to journal › Article › peer-review

• Knowledge Graph Embeddings: Open Challenges and Opportunities

  Biswas, R., Kaffee, L.-A., Cochez, M., Dumbrava, S., Jendal, T., Lissandrini, M., Lopez, V., Menc, E. L., Paulheim, H., Sack, H., Vakaj, E. K. & de Melo, G., Dec 1 2023, In: Transactions on Graph Data and Knowledge. 1, 1

  Research output: Contribution to journal › Article › peer-review

• Metadata Matters: Identifying Research Communities and Estimating Author Influence in Networks

  Fitzgerald, J., Jun 2 2023, In: SSRN.

  Research output: Contribution to journal › Article › peer-review

  Open Access

• Modelling clinical narrative as computable knowledge: The NICE computable implementation guidance project

  Scott, P., Heigl, M., McCay, C., Shepperdson, P., Walton, E.-L., Andrikopoulou, E., Brunnhuber, K., Cornelius, G., Faulding, S., McAlister, B., Rowark, S., South, M., Thomas, M. R., Whatling, J., Wiliams, J., Wyatt, J. C. & Greaves, F., Sep 28 2023, In: Wiley Online Library.

  Research output: Contribution to journal › Article › peer-review

  Open Access

• Monitoramento de Logs da Platforma HPCC Systems em Cloud

  Ribas, N. G., Oliveria, A., Watanuki, H. & Plenz, P., 2023.

  Research output: Contribution to conference › Paper › peer-review

• NLP for Chemistry: Introduction and Recent Advances

  Thorne, C., 2023

  Research output: Other contribution › peer-review

• Once highly productive, forever highly productive? Full professors’ research productivity from a longitudinal perspective

  Kwiek, M. & Roszka, W., Mar 24 2023, In: Higher Education.

  Research output: Contribution to journal › Article › peer-review

  Open Access

• Parameter-Efficient Sparse Retrievers and Rerankers Using Adapters

  Pal, V., Lassance, C., Déjean, H. & Clinchant, S., 2023, Advances in Information Retrieval. Kamps, J., Goeuriot, L., Crestani, F., Maistro, M., Joho, H., Davis, B., Gurrin, C., Kruschwitz, U. & Caputo, A. (eds.). Cham: Springer Nature, p. 16-31 16 p. (Lecture Notes in Computer Science).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

• Peer Review Workbench (PRW): A step-by-step demo on how to run research on peer review data through ICSR (International Center for the Study of Research)'s lab environment

  Mehmani, B. & James, K., Feb 2023

  Research output: Other contribution › peer-review

• Qualifier Recommendation for Wikidata

  Ducu, A. M. & Cochez, M., Nov 1 2023, The 4th Wikidata Workshop @2023. Athens, Greece

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

• Reasoning beyond Triples: Recent Advances in Knowledge Graph Embeddings

  Xiong, B., Nayyeri, M., Daza, D. & Cochez, M., 2023, Proceedings of the 32nd ACM International Conference on Information and Knowledge Management, CIKM 2023, Birmingham, United Kingdom, October 21-25, 2023. Frommholz, I., Hopfgartner, F., Lee, M., Oakes, M., Lalmas, M., Zhang, M. & Santos, R. L. T. (eds.). Association for Computing Machinery (ACM), p. 5228-5231 4 p.

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

• Structural Summarization of Semantic Graphs Using Quotients

  Scherp, A., Richerby, D., Blume, T., Cochez, M. & Rau, J., Dec 1 2023, In: Transactions on Graph Data and Knowledge. 1, 1

  Research output: Contribution to journal › Article › peer-review

• Transparency in conducting and reporting research: A survey of authors, reviewers, and editors across scholarly disciplines

  Mailcki, M., Aalbersberg, I. J., Mulligan, A., Bouter, L. & ter Riet, G., Mar 8 2023, In: PLoS ONE.

  Research output: Contribution to journal › Article › peer-review

  Open Access
• 2022

  [ICSR Perspectives] Corresponding Authors: Past and Present How Has the Role of Corresponding Author Changed Since the Early 2000s?

  Ding, A. & Herbert, R., Mar 8 2022.

  Research output: Working paper

• [ICSR Perspectives] Tales of the Unexpected: Designing for Serendipity in Research

  Herbert, R., Plume, A. M., Willems, L. & Wade, E., Mar 13 2022.

  Research output: Working paper

  File

• 2ndworkshop on digital infrastructures for scholarly content objects (DISCO'22)

  Balke, W. T., Kroll, H., Fu, Y., Schneider, J. & De Waard, A., Jun 20 2022, JCDL 2022 - Proceedings of the ACM/IEEE Joint Conference on Digital Libraries in 2022. Institute of Electrical and Electronics Engineers Inc., 58. (Proceedings of the ACM/IEEE Joint Conference on Digital Libraries).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

• Analysing Elsevier journal metadata with a new specialized workbench inside ICSR Lab

  Mehmani, B., Plume, A. M., James, K., Marusic, A., Malički, M., Petchiappan, R., Tsakonas, E. & Grimaldo, F., Sep 6 2022, (SSRN).

  Research output: Working paper

  Open Access

• Annotating and Indexing Scientific Articles with Rare Diseases

  Azarbonyad, H., Afzal, Z., Dumoulin, M. & Tsatsaronis, G., 2022.

  Research output: Contribution to conference › Paper › peer-review

• A roadmap for the functional annotation of protein families: a community perspective

  Valery de Crecy-Lagard, Aug 12 2022, In: Database : the journal of biological databases and curation. 2022

  Research output: Contribution to journal › Article › peer-review

• Birds of a Feather Flock Together: Measuring Grant Topic Diversity through Effective Size [ICSR Reports]

  Yim, A., Jul 22 2022.

  Research output: Working paper

• Case Study: Mapping the impact of science on education policy during the COVID-19 pandemic

  Mahfouz, B., Mulgan, G. & Capra, L., Sep 7 2022.

  Research output: Contribution to conference › Paper › peer-review

• Contribution Score: Crediting contributions among co-authors

  Sivertsen, G., Zhang, L., Ding, A., Herbert, R. & Plume, A. M., Sep 7 2022.

  Research output: Contribution to conference › Paper › peer-review

  Open Access

• Document-Based Nuclear Archaeology

  Reistad, O., Glaser, A., Frank, R. & Kaald, S., Jul 24 2022, In: Document-Based Nuclear Archaeology, Science & Global Security.

  Research output: Contribution to journal › Article › peer-review

• Electronic health record-based patient tracking by emergency medicine physicians

  Villalba, C., Burke, R., Gurley, K., Dhaliwal, G. & Grossman, S., Apr 2022, In: AEM Education and Training. 6, 2

  Research output: Contribution to journal › Article › peer-review

  Open Access

• Exposure-Aware Recommendation using Contextual Bandits

  Mansoury, M., Mobasher, B. & van Hoof, H., Sep 1 2022, 5th FAccTRec Workshop: Responsible Recommendation. Association for Computing Machinery (ACM)

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

• How can we measure research impact? Funders share their insights: Collaborative efforts to understand the societal impact of research could increase impact and measure ROI

  Herbert, R., Aug 31 2022.

  Research output: Working paper

• How the University of Waterloo lost and reclaimed her impact

  Sivertsen, G., 2022.

  Research output: Contribution to conference › Paper › peer-review

• Hyperbolic Embedding Inference for Structured Multi-Label Prediction

  Xiong, B., Cochez, M., Nayyeri, M. & Staab, S., Nov 1 2022, NeurIPS2022.

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

• ICSR Lab: Specialized Workbenches: Peer Review Workbench

  James, K. (Photographer), Plume, A. M. (Photographer) & Mehmani, B. (Photographer), Sep 7 2022

  Research output: Non-textual form › Software

• Identifying genes targeted by disease-associated non-coding SNPs with a protein knowledge graph

  Vlietstra, W. J., Vos, R., van Mulligen, E. M., Jenster, G. W. & Kors, J. A., Jul 13 2022, In: PLoS ONE. 17, 7, p. e0271395

  Research output: Contribution to journal › Article › peer-review

• Identifying research supporting the United Nations Sustainable Development Goals

  Kashnitsky, Y., Doornenbal, M., Roberge, G., Mu, J., Kang, K., Wang, W., Vanderfeesten, M., Rivest, M., Keßler, L., Jaworek, R., Vignes, M., Jayabalasingham, B., Boonen, F., James, C. & Labrosse, I., Sep 15 2022, In: ARXIV.

  Research output: Contribution to journal › Article › peer-review

  Open Access

• Intersection of Parallels as an Early Stopping Criterion

  Vardasbi, A., de Rijke, M. & Dehghani, M., Oct 1 2022, Proceedings of the 31st ACM International Conference on Information Knowledge Management. New York, NY, USA: Association for Computing Machinery, p. 1965-1974 10 p. (CIKM '22).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

• Meta-research and researcher evaluation (In: Derrick, Gemma; Oancea, Alis; Nuseibeh, Nuzha, (eds.) A Handbook of Meta-Research. Elgar.)

  Plume, A. M., Derrick, G., Oancea, A. & Nuseibeh, N., Oct 22 2022, (E-pub ahead of print).

  Research output: Working paper