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• 2024

  Automated Synonym Discovery for Taxonomy Maintenance Using Semantic Search Techniques

  Moradi Fard, M., Thorne, C., Sorolla Bayod, P., Akhondi, S. & Vlietstra, W., 2024, Natural Language Processing and Information Systems - 29th International Conference on Applications of Natural Language to Information Systems, NLDB 2024, Proceedings. Rapp, A., Di Caro, L., Meziane, F. & Sugumaran, V. (eds.). Springer Science and Business Media Deutschland GmbH, p. 352-358 7 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 14763 LNCS).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

• Knowledge Acquisition Passage Retrieval: Corpus, Ranking Models, and Evaluation Resources

  Capari, A., Azarbonyad, H., Tsatsaronis, G., Afzal, Z., Dunham, J. & Kamps, J., Sep 14 2024, In: Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics).

  Research output: Contribution to journal › Article › peer-review

• Learning Section Weights for Multi-label Document Classification

  Moradi Fard, M., Sorolla Bayod, P., Motarjem, K., Alian Nejadi, M., Akhondi, S. & Thorne, C., 2024, Natural Language Processing and Information Systems - 29th International Conference on Applications of Natural Language to Information Systems, NLDB 2024, Proceedings. Rapp, A., Di Caro, L., Meziane, F. & Sugumaran, V. (eds.). Springer Science and Business Media Deutschland GmbH, p. 359-366 8 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 14763 LNCS).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

• Overview of the DagPap24 Shared Task on Detecting Automatically Generated Scientific Papers

  Chamezopoulos, S., Herrmannova, D., de Waard, A., Rosati, D. & Kashnitsky, Y., 2024, SDP 2024 - 4th Workshop on Scholarly Document Processing, Proceedings of the Workshop. Ghosal, T., Singh, A., de Waard, A., Mayr, P., Naik, A., Weller, O., Lee, Y., Shen, S. & Qin, Y. (eds.). Association for Computational Linguistics (ACL), p. 7-11 5 p. (SDP 2024 - 4th Workshop on Scholarly Document Processing, Proceedings of the Workshop).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

• Overview of the Fourth Workshop on Scholarly Document Processing

  Ghosal, T., Singh, A., de Waard, A., Mayr, P., Naik, A., Weller, O., Lee, Y., Shen, S. & Qin, Y., 2024, SDP 2024 - 4th Workshop on Scholarly Document Processing, Proceedings of the Workshop. Ghosal, T., Singh, A., de Waard, A., Mayr, P., Naik, A., Weller, O., Lee, Y., Shen, S. & Qin, Y. (eds.). Association for Computational Linguistics (ACL), p. 1-6 6 p. (SDP 2024 - 4th Workshop on Scholarly Document Processing, Proceedings of the Workshop).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

• The silver lining of COVID-19 restrictions: research output of academics under lockdown

  Mehmani, B., Garcia-Costa, D., Grimaldo, F., Bravo, G. & Squazzoni, F., Jan 24 2024, In: Scientometrics.

  Research output: Contribution to journal › Article › peer-review

• Towards the 4th generation university: a collaboration between Elsevier and TU Eindhoven

  Dumoulin, M. & Malkov, D., Apr 23 2024, In: SSRN.

  Research output: Contribution to journal › Article › peer-review

• Towards the 4th generation university: a collaboration between Elsevier and TU Eindhoven

  Malkov, D. & Dumoulin, M., Apr 23 2024

  Research output: Other contribution › peer-review
• 2023

  Adapting Neural Link Predictors for Data-Efficient Complex Query Answering

  Arakelyan, E., Minervini, P., Daza, D., Cochez, M. & Augenstein, I., Jul 1 2023, ArXiv. New Orleans: ArXiv.org

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

• A knowledge graph approach to predict and interpret disease-causing gene interactions

  Renaux, A., Terwagne, C., Cochez, M., Tiddi, I., Nowé, A. & Lenaerts, T., 2023, In: BMC Bioinformatics. 24, 1, p. 324 1 p.

  Research output: Contribution to journal › Article › peer-review

• A Machine With Human-Like Memory Systems

  Kim, T., Cochez, M., Francois-Lavet, V., Neerincx, M. & Vossen, P., 2023, arXiv preprint arXiv:2204.01611.

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

• Annotating Research Infrastructure in Scientific Papers: An NLP-driven Approach

  Tabatabaei, S. A., Cheirmpos, G., Doornenbal, M., Zigoni, A., Moore, V. & Tsatsaronis, G., Jul 2023.

  Research output: Contribution to conference › Paper › peer-review

• Approximate Answering of Graph Queries

  Cochez, M., Alivanistos, D., Arakelyan, E., Berrendorf, M., Daza, D., Galkin, M., Minervini, P., Niepert, M. & Ren, H., 2023, Compendium of Neurosymbolic Artificial Intelligence. Hitzler, P., Sarker, M. K. & Eberhart, A. (eds.). IOS Press, Vol. 369. p. 373-386 14 p. (Frontiers in Artificial Intelligence and Applications).

  Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review

• Benchmarking Named Entity Recognition Approaches for Extracting Research Infrastructure Information from Text

  Cheirmpos, G. & Tabatabaei, S. A., 2023, Benchmarking Named Entity Recognition Approaches for Extracting Research Infrastructure Information from Text.

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

• Bibliometrics Methods in Detecting Citations to Questionable Journals

  Barrantes, B. S. L., Dalton, S. & Andre, D., 2023, In: Journal of Academic Librarianship.

  Research output: Contribution to journal › Article › peer-review

  Open Access

• BioBLP: a modular framework for learning on multimodal biomedical knowledge graphs

  Daza, D., Alivanistos, D., Mitra, P., Pijnenburg, T., Cochez, M. & Groth, P., Dec 1 2023, In: Journal of Biomedical Semantics. 14, 1, p. 20 1 p.

  Research output: Contribution to journal › Article › peer-review

• Descriptive Comparison of Visual Ontology Change Summarisation Methods

  Chung, K., Pernisch, R. & Schlobach, S., 2023, The Semantic Web: ESWC 2023 Satellite Events. Pesquita, C., Skaf-Molli, H., Efthymiou, V., Kirrane, S., Ngonga, A., Collarana, D., Cerqueira, R., Alam, M., Trojahn, C. & Hertling, S. (eds.). Cham: Springer Nature, Vol. 13998. p. 54-58 5 p.

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

• Does Chinese Research Hinge on US Coauthors ? Evidence from the China Initiative

  Aghion, P., Antonin, C., Paluskiewicz, L., Stromberg, D., Sun, X., Wargon, R. & Westin, K., 2023.

  Research output: Working paper

• Do you catch my drift? On the usage of embedding methods to measure concept shift in knowledge graphs

  Verkijk, S., Roothaert, R., Pernisch, R. & Schlobach, S., Dec 1 2023, Proceedings of the 12th Knowledge Capture Conference 2023. New York, NY, USA: Association for Computing Machinery (ACM), p. 70-74 5 p. (K-CAP '23).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

• Explainable AI for Bioinformatics: Methods, Tools and Applications

  Karim, M. R., Islam, T., Shajalal, M., Beyan, O., Lange, C., Cochez, M., Rebholz-Schuhmann, D. & Decker, S., Oct 1 2023, In: Briefings in Bioinformatics. 24, 5

  Research output: Contribution to journal › Article › peer-review

• Extending Label Aggregation Models with a Gaussian Process to Denoise Crowdsourcing Labels

  Li, D. & De Rijke, M., 2023.

  Research output: Contribution to conference › Paper › peer-review

• Focused Contrastive Loss for Classification With Pre-Trained Language Models

  He, J., Li, Y., Zhai, Z., Fang, B., Thorne, C., Druckenbrodt, C., Akhondi, S. & Verspoor, K., Nov 3 2023, In: IEEE Transactions on Knowledge and Data Engineering.

  Research output: Contribution to journal › Article › peer-review

  Open Access

• How Does Knowledge Evolve in Open Knowledge Graphs?

  Polleres, A., Pernisch, R., Bonifati, A., Dell'Aglio, D., Dobriy, D., Dumbrava, S., Etcheverry, L., Ferranti, N., Hose, K., Jiménez-Ruiz, E., Lissandrini, M., Scherp, A., Tommasini, R. & Wachs, J., 2023, In: Transactions on Graph Data and Knowledge.

  Research output: Contribution to journal › Article › peer-review

• Knowledge Graph Embeddings: Open Challenges and Opportunities

  Biswas, R., Kaffee, L.-A., Cochez, M., Dumbrava, S., Jendal, T., Lissandrini, M., Lopez, V., Menc, E. L., Paulheim, H., Sack, H., Vakaj, E. K. & de Melo, G., Dec 1 2023, In: Transactions on Graph Data and Knowledge. 1, 1

  Research output: Contribution to journal › Article › peer-review

• Metadata Matters: Identifying Research Communities and Estimating Author Influence in Networks

  Fitzgerald, J., Jun 2 2023, In: SSRN.

  Research output: Contribution to journal › Article › peer-review

  Open Access

• Modelling clinical narrative as computable knowledge: The NICE computable implementation guidance project

  Scott, P., Heigl, M., McCay, C., Shepperdson, P., Walton, E.-L., Andrikopoulou, E., Brunnhuber, K., Cornelius, G., Faulding, S., McAlister, B., Rowark, S., South, M., Thomas, M. R., Whatling, J., Wiliams, J., Wyatt, J. C. & Greaves, F., Sep 28 2023, In: Wiley Online Library.

  Research output: Contribution to journal › Article › peer-review

  Open Access

• Monitoramento de Logs da Platforma HPCC Systems em Cloud

  Ribas, N. G., Oliveria, A., Watanuki, H. & Plenz, P., 2023.

  Research output: Contribution to conference › Paper › peer-review

• NLP for Chemistry: Introduction and Recent Advances

  Thorne, C., 2023

  Research output: Other contribution › peer-review

• Once highly productive, forever highly productive? Full professors’ research productivity from a longitudinal perspective

  Kwiek, M. & Roszka, W., Mar 24 2023, In: Higher Education.

  Research output: Contribution to journal › Article › peer-review

  Open Access

• Pan-cancer analysis of whole genomes

  Neal, D., 2023, In: Nature.

  Research output: Contribution to journal › Article › peer-review

  Open Access

• Parameter-Efficient Sparse Retrievers and Rerankers Using Adapters

  Pal, V., Lassance, C., Déjean, H. & Clinchant, S., 2023, Advances in Information Retrieval. Kamps, J., Goeuriot, L., Crestani, F., Maistro, M., Joho, H., Davis, B., Gurrin, C., Kruschwitz, U. & Caputo, A. (eds.). Cham: Springer Nature, p. 16-31 16 p. (Lecture Notes in Computer Science).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

• Peer Review Workbench (PRW): A step-by-step demo on how to run research on peer review data through ICSR (International Center for the Study of Research)'s lab environment

  Mehmani, B. & James, K., Feb 2023

  Research output: Other contribution › peer-review

• Qualifier Recommendation for Wikidata

  Ducu, A. M. & Cochez, M., Nov 1 2023, The 4th Wikidata Workshop @2023. Athens, Greece

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

• Reasoning beyond Triples: Recent Advances in Knowledge Graph Embeddings

  Xiong, B., Nayyeri, M., Daza, D. & Cochez, M., 2023, Proceedings of the 32nd ACM International Conference on Information and Knowledge Management, CIKM 2023, Birmingham, United Kingdom, October 21-25, 2023. Frommholz, I., Hopfgartner, F., Lee, M., Oakes, M., Lalmas, M., Zhang, M. & Santos, R. L. T. (eds.). Association for Computing Machinery (ACM), p. 5228-5231 4 p.

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

• Structural Summarization of Semantic Graphs Using Quotients

  Scherp, A., Richerby, D., Blume, T., Cochez, M. & Rau, J., Dec 1 2023, In: Transactions on Graph Data and Knowledge. 1, 1

  Research output: Contribution to journal › Article › peer-review

• Transparency in conducting and reporting research: A survey of authors, reviewers, and editors across scholarly disciplines

  Mailcki, M., Aalbersberg, I. J., Mulligan, A., Bouter, L. & ter Riet, G., Mar 8 2023, In: PLoS ONE.

  Research output: Contribution to journal › Article › peer-review

  Open Access
• 2022

  [ICSR Perspectives] Corresponding Authors: Past and Present How Has the Role of Corresponding Author Changed Since the Early 2000s?

  Ding, A. & Herbert, R., Mar 8 2022.

  Research output: Working paper

• [ICSR Perspectives] Tales of the Unexpected: Designing for Serendipity in Research

  Herbert, R., Plume, A. M., Willems, L. & Wade, E., Mar 13 2022.

  Research output: Working paper

  File

• 2ndworkshop on digital infrastructures for scholarly content objects (DISCO'22)

  Balke, W. T., Kroll, H., Fu, Y., Schneider, J. & De Waard, A., Jun 20 2022, JCDL 2022 - Proceedings of the ACM/IEEE Joint Conference on Digital Libraries in 2022. Institute of Electrical and Electronics Engineers Inc., 58. (Proceedings of the ACM/IEEE Joint Conference on Digital Libraries).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

• Analysing Elsevier journal metadata with a new specialized workbench inside ICSR Lab

  Mehmani, B., Plume, A. M., James, K., Marusic, A., Malički, M., Petchiappan, R., Tsakonas, E. & Grimaldo, F., Sep 6 2022, (SSRN).

  Research output: Working paper

  Open Access

• Annotating and Indexing Scientific Articles with Rare Diseases

  Azarbonyad, H., Afzal, Z., Dumoulin, M. & Tsatsaronis, G., 2022.

  Research output: Contribution to conference › Paper › peer-review

• A roadmap for the functional annotation of protein families: a community perspective

  Valery de Crecy-Lagard, Aug 12 2022, In: Database : the journal of biological databases and curation. 2022

  Research output: Contribution to journal › Article › peer-review

• Birds of a Feather Flock Together: Measuring Grant Topic Diversity through Effective Size [ICSR Reports]

  Yim, A., Jul 22 2022.

  Research output: Working paper

• Case Study: Mapping the impact of science on education policy during the COVID-19 pandemic

  Mahfouz, B., Mulgan, G. & Capra, L., Sep 7 2022.

  Research output: Contribution to conference › Paper › peer-review

• Contribution Score: Crediting contributions among co-authors

  Sivertsen, G., Zhang, L., Ding, A., Herbert, R. & Plume, A. M., Sep 7 2022.

  Research output: Contribution to conference › Paper › peer-review

  Open Access

• Document-Based Nuclear Archaeology

  Reistad, O., Glaser, A., Frank, R. & Kaald, S., Jul 24 2022, In: Document-Based Nuclear Archaeology, Science & Global Security.

  Research output: Contribution to journal › Article › peer-review

• Electronic health record-based patient tracking by emergency medicine physicians

  Villalba, C., Burke, R., Gurley, K., Dhaliwal, G. & Grossman, S., Apr 2022, In: AEM Education and Training. 6, 2

  Research output: Contribution to journal › Article › peer-review

  Open Access

• Exposure-Aware Recommendation using Contextual Bandits

  Mansoury, M., Mobasher, B. & van Hoof, H., Sep 1 2022, 5th FAccTRec Workshop: Responsible Recommendation. Association for Computing Machinery (ACM)

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

• How can we measure research impact? Funders share their insights: Collaborative efforts to understand the societal impact of research could increase impact and measure ROI

  Herbert, R., Aug 31 2022.

  Research output: Working paper

• How the University of Waterloo lost and reclaimed her impact

  Sivertsen, G., 2022.

  Research output: Contribution to conference › Paper › peer-review