Research output per year
Research output per year
- 32 results
Search results
-
2025
Extracting, Detecting, and Generating Research Questions for Scientific Articles
Taslimi, S., Capari, A., Azarbonyad, H., Zhu, Z. L., Afzal, Z., Kanoulas, E. & Tsatsaronis, G., 2025, Main Conference. Rambow, O., Wanner, L., Apidianaki, M., Al-Khalifa, H., Di Eugenio, B. & Schockaert, S. (eds.). Association for Computational Linguistics (ACL), p. 8573-8588 16 p. (Proceedings - International Conference on Computational Linguistics, COLING; vol. Part F206484-1).Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review
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2024
Enhancing Scientific Document Simplification through Adaptive Retrieval and Generative Models
Capari, A., Azarbonyad, H., Afzal, Z. & Tsatsaronis, G., 2024, In: CEUR Workshop Proceedings. 3740, p. 3206-3229 24 p.Research output: Contribution to journal › Conference article › peer-review
1 Scopus citations -
Scalable Patent Classification with Aggregated Multi-View Ranking
Li, D., Yadav, V., Zhu, Z. L., Fard, M. M., Tsatsaronis, G. & Afzal, Z., 2024, 2024 Joint International Conference on Computational Linguistics, Language Resources and Evaluation, LREC-COLING 2024 - Main Conference Proceedings. Calzolari, N., Kan, M.-Y., Hoste, V., Lenci, A., Sakti, S. & Xue, N. (eds.). European Language Resources Association (ELRA), p. 14336-14346 11 p. (2024 Joint International Conference on Computational Linguistics, Language Resources and Evaluation, LREC-COLING 2024 - Main Conference Proceedings).Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review
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ScienceDirect Topic Pages: A Knowledge Base of Scientific Concepts Across Various Science Domains
Capari, A., Azarbonyad, H., Tsatsaronis, G., Afzal, Z. & Dunham, J., Jul 11 2024, SIGIR 2024 - Proceedings of the 47th International ACM SIGIR Conference on Research and Development in Information Retrieval. Association for Computing Machinery, Inc, p. 2976-2980 5 p. (SIGIR 2024 - Proceedings of the 47th International ACM SIGIR Conference on Research and Development in Information Retrieval).Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review
3 Scopus citations -
2023
Elsevier at SimpleText: Passage Retrieval by Fine-tuning GPL on Scientific Documents
Capari, A., Azarbonyad, H., Tsatsaronis, G. & Afzal, Z., 2023, In: CEUR Workshop Proceedings. 3497, p. 2923-2934 12 p.Research output: Contribution to journal › Conference article › peer-review
2 Scopus citations -
Enhancing Extreme Multi-Label Text Classification: Addressing Challenges in Model, Data, and Evaluation
Li, D., Zhu, Z. L., van de Loo, J., Gómez, A. M., Yadav, V., Tsatsaronis, G. & Afzal, Z., 2023, p. 313-321. 9 p.Research output: Contribution to conference › Paper › peer-review
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Generating Topic Pages for Scientific Concepts Using Scientific Publications
Azarbonyad, H., Afzal, Z. & Tsatsaronis, G., 2023, Advances in Information Retrieval - 45th European Conference on Information Retrieval, ECIR 2023, Proceedings. Kamps, J., Goeuriot, L., Crestani, F., Maistro, M., Joho, H., Davis, B., Gurrin, C., Caputo, A. & Kruschwitz, U. (eds.). Springer Science and Business Media Deutschland GmbH, p. 341-349 9 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 13981 LNCS).Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review
2 Scopus citations -
2022
Extended Overview of ChEMU 2022 Evaluation Campaign: Information Extraction in Chemical Patents
Li, Y., Fang, B., He, J., Yoshikawa, H., Akhondi, S. A., Druckenbrodt, C., Thorne, C., Afzal, Z., Zhai, Z., Machi, K., Yoshioka, M., Jang, Y., Song, H., Lee, J., Kim, G., Kim, Y., Choi, S. J., Lee, H., Bae, K. & Mahendran, D. & 4 others, , 2022, In: CEUR Workshop Proceedings. 3180, p. 758-781 24 p.Research output: Contribution to journal › Conference article › peer-review
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Few-shot initializing of Active Learner via Meta-Learning
Zhu, Z. L., Yadav, V., Afzal, Z. & Tsatsaronis, G., 2022, Findings of the Association for Computational Linguistics: EMNLP 2022. Goldberg, Y., Kozareva, Z. & Zhang, Y. (eds.). Association for Computational Linguistics (ACL), p. 1117-1133 17 p. (Findings of the Association for Computational Linguistics: EMNLP 2022).Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review
2 Scopus citations -
Gender parity and homophily in the Drug and Alcohol Dependence editorial process
Schick, M. R., Tomko, R. L., Maralit, A. M., Afzal, Z., Squeglia, L. M., Freda, A., Porrino, L., Dahne, J., McClure, E. A. & Strain, E. C., Jul 1 2022, In: Drug and Alcohol Dependence. 236, 109493.Research output: Contribution to journal › Article › peer-review
Open Access2 Scopus citations -
Overview of ChEMU 2022 Evaluation Campaign: Information Extraction in Chemical Patents
Li, Y., Fang, B., He, J., Yoshikawa, H., Akhondi, S. A., Druckenbrodt, C., Thorne, C., Afzal, Z., Zhai, Z., Baldwin, T. & Verspoor, K., 2022, Experimental IR Meets Multilinguality, Multimodality, and Interaction - 13th International Conference of the CLEF Association, CLEF 2022, Proceedings. Barrón-Cedeño, A., Da San Martino, G., Faggioli, G., Ferro, N., Degli Esposti, M., Sebastiani, F., Macdonald, C., Pasi, G., Hanbury, A. & Potthast, M. (eds.). Springer Science and Business Media Deutschland GmbH, p. 521-540 20 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 13390 LNCS).Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review
4 Scopus citations -
The ChEMU 2022 Evaluation Campaign: Information Extraction in Chemical Patents
Li, Y., Fang, B., He, J., Yoshikawa, H., Akhondi, S. A., Druckenbrodt, C., Thorne, C., Zhai, Z., Afzal, Z., Cohn, T., Baldwin, T. & Verspoor, K., 2022, Advances in Information Retrieval - 44th European Conference on IR Research, ECIR 2022, Proceedings. Hagen, M., Verberne, S., Macdonald, C., Seifert, C., Balog, K., Nørvåg, K. & Setty, V. (eds.). Springer Science and Business Media Deutschland GmbH, p. 400-407 8 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 13186 LNCS).Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review
3 Scopus citations -
Unsupervised Dense Retrieval for Scientific Articles
Li, D., Yadav, V., Afzal, Z. & Tsatsaronis, G., 2022, EMNLP 2022 - Proceedings of the 2022 Conference on Empirical Methods in Natural Language Processing: Industry Track. Association for Computational Linguistics (ACL), p. 323-331 9 p. (EMNLP 2022 - Proceedings of the 2022 Conference on Empirical Methods in Natural Language Processing: Industry Track).Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review
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2021
ChEMU 2020: Natural Language Processing Methods Are Effective for Information Extraction From Chemical Patents
He, J., Nguyen, D. Q., Akhondi, S. A., Druckenbrodt, C., Thorne, C., Hoessel, R., Afzal, Z., Zhai, Z., Fang, B., Yoshikawa, H., Albahem, A., Cavedon, L., Cohn, T., Baldwin, T. & Verspoor, K., 2021, In: Frontiers in Research Metrics and Analytics. 6, 654438.Research output: Contribution to journal › Article › peer-review
Open Access34 Scopus citations -
ChEMU 2021: Reaction Reference Resolution and Anaphora Resolution in Chemical Patents
He, J., Fang, B., Yoshikawa, H., Li, Y., Akhondi, S. A., Druckenbrodt, C., Thorne, C., Afzal, Z., Zhai, Z., Cavedon, L., Cohn, T., Baldwin, T. & Verspoor, K., 2021, Advances in Information Retrieval - 43rd European Conference on IR Research, ECIR 2021, Proceedings. Hiemstra, D., Moens, M.-F., Mothe, J., Perego, R., Potthast, M. & Sebastiani, F. (eds.). Springer Science and Business Media Deutschland GmbH, p. 608-615 8 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 12657 LNCS).Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review
11 Scopus citations -
Extended overview of ChEMU 2021: Reaction reference resolution and anaphora resolution in chemical patents
Li, Y., Fang, B., He, J., Yoshikawa, H., Akhondi, S. A., Druckenbrodt, C., Thorne, C., Afzal, Z., Zhai, Z., Baldwin, T. & Verspoor, K., 2021, In: CEUR Workshop Proceedings. 2936, p. 693-709 17 p.Research output: Contribution to journal › Conference article › peer-review
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2020
An Extended Overview of the CLEF 2020 ChEMU Lab: Information Extraction of Chemical Reactions from Patents
He, J., Nguyen, D. Q., Akhondi, S. A., Druckenbrodt, C., Thorne, C., Hoessel, R., Afzal, Z., Zhai, Z., Fang, B., Yoshikawa, H., Albahem, A., Wang, J., Ren, Y., Zhang, Z., Zhang, Y., Dao, M. H., Ruas, P., Lamurias, A., Couto, F. M. & Copara, J. & 22 others, , 2020, In: CEUR Workshop Proceedings. 2696Research output: Contribution to journal › Conference article › peer-review
2 Scopus citations -
2019
Generating and evaluating a propensity model using textual features from electronic medical records
Afzal, Z., Masclee, G. M. C., Sturkenboom, M. C. J. M., Kors, J. A. & Schuemie, M. J., Mar 2019, In: PLoS ONE. 14, 3, e0212999.Research output: Contribution to journal › Article › peer-review
Open Access5 Scopus citations -
2017
Tagging Funding Agencies and Grants in Scientific Articles using Sequential Learning Models
Kayal, S., Afzal, Z., Tsatsaronis, G., Katrenko, S., Coupet, P., Doornenbal, M. & Gregory, M., 2017, BioNLP 2017 - SIGBioMed Workshop on Biomedical Natural Language Processing, Proceedings of the 16th BioNLP Workshop. Association for Computational Linguistics (ACL), p. 216-221 6 p. (BioNLP 2017 - SIGBioMed Workshop on Biomedical Natural Language Processing, Proceedings of the 16th BioNLP Workshop).Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review
5 Scopus citations -
2016
Chemical entity recognition in patents by combining dictionary-based and statistical approaches
Akhondi, S. A., Pons, E., Afzal, Z., van Haagen, H., Becker, B. F. H., Hettne, K. M., van Mulligen, E. M. & Kors, J. A., 2016, In: Database : the journal of biological databases and curation. 2016Research output: Contribution to journal › Article › peer-review
Open Access21 Scopus citations -
Concept recognition in French biomedical text using automatic translation
Afzal, Z., Akhondi, S. A., van Haagen, H. H. H. B. M., van Mulligen, E. M. & Kors, J. A., 2016, Experimental IR Meets Multilinguality, Multimodality, and Interaction - 7th International Conference of the CLEF Association, CLEF 2016, Proceedings. Larsen, B., Cappellato, L., Ferro, N., Fuhr, N., Balog, K., Macdonald, C., Quaresma, P. & Gonçalves, T. (eds.). Springer Verlag, p. 162-173 12 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 9822 LNCS).Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review
4 Scopus citations -
Erasmus MC at CLEF eHealth 2016: Concept recognition and coding in French texts
Van Mulligen, E. M., Afzal, Z., Akhondi, S. A., Vo, D. & Kors, J. A., 2016, In: CEUR Workshop Proceedings. 1609, p. 171-178 8 p.Research output: Contribution to journal › Conference article › peer-review
16 Scopus citations -
Extraction of chemical-induced diseases using prior knowledge and textual information
Pons, E., Becker, B. F. H., Akhondi, S. A., Afzal, Z., Van Mulligen, E. M. & Kors, J. A., 2016, In: Database. 2016, baw046.Research output: Contribution to journal › Article › peer-review
Open Access33 Scopus citations -
2015
Biomedical concept recognition in French text using automatic translation of English terms
Afzal, Z., Akhondi, S. A., Van Haagen, H. H. H. B. M., Van Mulligen, E. M. & Kors, J. A., 2015, In: CEUR Workshop Proceedings. 1391Research output: Contribution to journal › Conference article › peer-review
6 Scopus citations -
2014
ContextD: An algorithm to identify contextual properties of medical terms in a dutch clinical corpus
Afzal, Z., Pons, E., Kang, N., Sturkenboom, M. C. J. M., Schuemie, M. J. & Kors, J. A., Nov 29 2014, In: BMC Bioinformatics. 15, 1, 373.Research output: Contribution to journal › Article › peer-review
Open Access31 Scopus citations -
Knowledge-based extraction of adverse drug events from biomedical text
Kang, N., Singh, B., Bui, C., Afzal, Z., van Mulligen, E. M. & Kors, J. A., Mar 4 2014, In: BMC Bioinformatics. 15, 1, 64.Research output: Contribution to journal › Article › peer-review
Open Access65 Scopus citations -
2013
Automatic generation of case-detection algorithms to identify children with asthma from large electronic health record databases
Afzal, Z., Engelkes, M., Verhamme, K. M. C., Janssens, H. M., Sturkenboom, M. C. J. M., Kors, J. A. & Schuemie, M. J., Aug 2013, In: Pharmacoepidemiology and Drug Safety. 22, 8, p. 826-833 8 p.Research output: Contribution to journal › Article › peer-review
33 Scopus citations -
Improving sensitivity of machine learning methods for automated case identification from free-text electronic medical records
Afzal, Z., Schuemie, M. J., Van Blijderveen, J. C., Sen, E. F., Sturkenboom, M. C. & Kors, J. A., 2013, In: BMC Medical Informatics and Decision Making. 13, 1, 30.Research output: Contribution to journal › Article › peer-review
Open Access42 Scopus citations -
Using rule-based natural language processing to improve disease normalization in biomedical text
Kang, N., Singh, B., Afzal, Z., van Mulligen, E. M. & Kors, J. A., 2013, In: Journal of the American Medical Informatics Association : JAMIA. 20, 5, p. 876-881 6 p.Research output: Contribution to journal › Article › peer-review
Open Access91 Scopus citations -
2012
Using an ensemble system to improve concept extraction from clinical records
Kang, N., Afzal, Z., Singh, B., van Mulligen, E. M. & Kors, J. A., Jun 2012, In: Journal of Biomedical Informatics. 45, 3, p. 423-428 6 p.Research output: Contribution to journal › Article › peer-review
Open Access28 Scopus citations -
2010
A concept annotation system for clinical records
Kang, N., Barendse, R., Afzal, Z., Singh, B., Schuemie, M. J., Van Mulligen, E. M. & Kors, J. A., 2010, In: CEUR Workshop Proceedings. 698Research output: Contribution to journal › Conference article › peer-review
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2006
Managing workflows in data environments using semantic technologies
Hashmi, N., Al-Malaise, A., Shahid, S. & Afzal, M. Z., 2006, Computational Intelligence International Conference on Intelligent Computing, ICIC 2006, Proceedings. Springer Verlag, p. 399-409 11 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 4114 LNAI - II).Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review