Projects per year
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Collaborations and top research areas from the last five years
Projects
- 2 Finished
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ChEMU: Cheminformatics Elsevier Melbourne University lab
Akhondi, S. (PI)
05/15/20 → 09/30/20
Project: Other
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Information Extraction for Chemical Reactions with University of Melbourne
Verspoor, K. (PI), Akhondi, S. (CoPI), Tsatsaronis, G. (CoI), Drukenbrodt, C. (CoI), Thorne, C. (CoI), Hoessel, R. (CoI), Cohn, T. (CoI), Nguyen, D. Q. (CoI), Zhai, Z. (CoI), Fang, B. (CoI), Yohsikawa, H. (CoI) & Doornenbal, M. (CoI)
06/1/18 → 12/31/22
Project: Research
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A pre-trained Language Model for Chemical Patents
He, J., Zhai, Z., Akhondi, S., Drukenbrodt, C., Thorne, C., Yoshikawa, H. & Verspoor, K., 2021, In: International Conference Recent Advances in Natural Language Processing, RANLP.Research output: Contribution to journal › Article › peer-review
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Chemical Reaction Reference Resolution in Patent
Yoshikawa, H., Akhondi, S., Thorne, C., Drukenbrodt, C., Hoessel, R., Zhai, Z., He, J., Baldwin, T. & Verspoor, K., 2021.Research output: Contribution to conference › Paper › peer-review
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ChemTables: A Dataset for Semantic Classification of Tables in Chemical Patents.
Zhai, Z., Drukenbrodt, C., Thorne, C., Akhondi, S., Nguyen, D. Q., Cohn, T. & Verspoor, K., 2021, In: Research Square preprint.Research output: Contribution to journal › Article › peer-review
Open Access -
ChEMU-Ref: A corpus for modeling anaphora resolution i n the chemical domain
Fang, B., Drukenbrodt, C., Akhondi, S., He, J., Baldwin, T. & Verspoor, K., 2021, Proceedings of the 16th Conference of the European Chapter of the Association for Computational Linguistics.Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review
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Natural Language Processing Methods are Effective for Information Extraction from Chemical Patents. Under review at Frontiers i n Research Metrics and Analytics, section Text-mining and Literature-based Discovery
He, J., Nguyen, D. Q., Akhondi, S., Drukenbrodt, C., Thorne, C., Hoessel, R., Afzal, Z., Zhai, Z., Fang, B., Yoshikawa, H., Albahem, A., Cavedon, L., Cohn, T., Baldwin, T. & Verspoor, K., 2021, In: Frontiers in Bioscience - Landmark.Research output: Contribution to journal › Article › peer-review
Datasets
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ChemTables Sample: dataset for table classification in chemical patents
Thorne, C. (Creator), Akhondi, S. (Creator), Druckenbrodt, C. (Creator), Zhai, Z. (Creator), Verspoor, K. (Creator), Cohn, T. (Creator), Nguyen, D. Q. (Creator) & Eustratiadis, P. (Creator), Mendeley Data, Nov 4 2020
Dataset
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Automatic identification of relevant chemical compounds from patents. The training corpus.
Akhondi, S. (Creator), Mendeley Data, 2019
Dataset
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ChEMU dataset for information extraction from chemical patents
Verspoor, K. (Creator), Nguyen, D. Q. (Creator), Akhondi, S. (Creator), Drukenbrodt, C. (Creator), Thorne, C. (Creator), Hoessel, R. (Creator), He, J. (Creator) & Zhai, Z. (Creator), Mendeley Data, 2020
Dataset
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ChEMU-Ref dataset for Modeling Anaphora Resolution i n the Chemical Domain.
Fang, B. (Creator), Drukenbrodt, C. (Creator), Yeow, C. (Creator), Novakovic, S. (Creator), Hoessel, R. (Creator), Akhondi, S. (Creator), He, J. (Creator), Mistica, M. (Creator), Baldwin, T. (Creator) & Verspoor, K. (Creator), Mendeley Data, 2021
Dataset
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Covid-19 Relevancy Algorithm Data Set for Identification of Core Scientific Articles
Afzal, Z. (Creator), Coupet, P. (Creator), Tsatsaronis, G. (Creator) & Akhondi, S. (Creator), Mendeley Data, 2020
Dataset
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ChEMU Shared Task 2022
Saber Akhondi (Organizer), Camilo Thorne (Organizer), Christian Drukenbrodt (Organizer) & Karin Verspoor (Organizer)
2022Activity: Participating in or organizing an event › Organizing a conference, workshop, ...
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ChEMU Shared Task 2021
Saber Akhondi (Organizer), Camilo Thorne (Organizer), Christian Drukenbrodt (Organizer) & Karin Verspoor (Organizer)
2021Activity: Participating in or organizing an event › Organizing a conference, workshop, ...
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Patent for system and method for text mining
Karin Verspoor (Participant) & Saber Akhondi (Participant)
2020Activity: Other
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ChEMU Shared Task 2020
Saber Akhondi (Organizer), Camilo Thorne (Organizer), Christian Drukenbrodt (Organizer) & Karin Verspoor (Organizer)
2020Activity: Participating in or organizing an event › Organizing a conference, workshop, ...
Press/Media
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How data scientists are uncovering chemical compounds hidden in patents
Karin Verspoor, George Tsatsaronis, Saber Akhondi, Christian Drukenbrodt, Ralph Hoessel, Camilo Thorne, Trevor Cohn, Dat Quoc Nguyen, Zenan Zhai, Biaoyan Fang & Hiyori Yohsikawa
11/28/19
1 Media contribution
Press/Media