Projects per year
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Collaborations and top research areas from the last five years
Projects
- 2 Finished
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ChEMU: Cheminformatics Elsevier Melbourne University lab
Akhondi, S. (PI)
05/15/20 → 09/30/20
Project: Other
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Information Extraction for Chemical Reactions with University of Melbourne
Verspoor, K. (PI), Akhondi, S. (CoPI), Tsatsaronis, G. (CoI), Drukenbrodt, C. (CoI), Thorne, C. (CoI), Hoessel, R. (CoI), Cohn, T. (CoI), Nguyen, D. Q. (CoI), Zhai, Z. (CoI), Fang, B. (CoI), Yohsikawa, H. (CoI) & Doornenbal, M. (CoI)
06/1/18 → 12/31/22
Project: Research
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The ChEMU 2022 Evaluation Campaign: Information Extraction in Chemical Patents
Li, Y., Fang, B., He, J., Yoshikawa, H., Akhondi, S. A., Druckenbrodt, C., Thorne, C., Zhai, Z., Afzal, Z., Cohn, T., Baldwin, T. & Verspoor, K., 2022, Advances in Information Retrieval - 44th European Conference on IR Research, ECIR 2022, Proceedings. Hagen, M., Verberne, S., Macdonald, C., Seifert, C., Balog, K., Nørvåg, K. & Setty, V. (eds.). Springer Science and Business Media Deutschland GmbH, p. 400-407 8 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 13186 LNCS).Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review
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A pre-trained Language Model for Chemical Patents
He, J., Zhai, Z., Akhondi, S., Drukenbrodt, C., Thorne, C., Yoshikawa, H. & Verspoor, K., 2021, In: International Conference Recent Advances in Natural Language Processing, RANLP.Research output: Contribution to journal › Article › peer-review
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Chemical Reaction Reference Resolution in Patent
Yoshikawa, H., Akhondi, S., Thorne, C., Drukenbrodt, C., Hoessel, R., Zhai, Z., He, J., Baldwin, T. & Verspoor, K., 2021.Research output: Contribution to conference › Paper › peer-review
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Chemical reaction reference resolution in patents
Yoshikawa, H., Akhondi, S., Thorne, C., Druckenbrodt, C., Hoessel, R., Zhai, Z., He, J., Baldwin, T. & Verspoor, K., 2021, In: CEUR Workshop Proceedings. 2909, p. 10-17 8 p.Research output: Contribution to journal › Conference article › peer-review
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ChemTables: a dataset for semantic classification on tables in chemical patents
Zhai, Z., Druckenbrodt, C., Thorne, C., Akhondi, S. A., Nguyen, D. Q., Cohn, T. & Verspoor, K., Dec 2021, In: Journal of Cheminformatics. 13, 1, 97.Research output: Contribution to journal › Article › peer-review
Open Access
Datasets
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ChEMU dataset for information extraction from chemical patents
Verspoor, K. (Creator), Nguyen, D. Q. (Creator), Akhondi, S. (Creator), Drukenbrodt, C. (Creator), Thorne, C. (Creator), Hoessel, R. (Creator), He, J. (Creator) & Zhai, Z. (Creator), Mendeley Data, 2020
Dataset
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ChemTables Sample: dataset for table classification in chemical patents
Thorne, C. (Creator), Akhondi, S. (Creator), Druckenbrodt, C. (Creator), Zhai, Z. (Creator), Verspoor, K. (Creator), Cohn, T. (Creator), Nguyen, D. Q. (Creator) & Eustratiadis, P. (Creator), Mendeley Data, Nov 4 2020
Dataset
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Automatic identification of relevant chemical compounds from patents. The training corpus.
Akhondi, S. (Creator), Mendeley Data, 2019
Dataset
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ChEMU-Ref dataset for Modeling Anaphora Resolution i n the Chemical Domain.
Fang, B. (Creator), Drukenbrodt, C. (Creator), Yeow, C. (Creator), Novakovic, S. (Creator), Hoessel, R. (Creator), Akhondi, S. (Creator), He, J. (Creator), Mistica, M. (Creator), Baldwin, T. (Creator) & Verspoor, K. (Creator), Mendeley Data, 2021
Dataset
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Covid-19 Relevancy Algorithm Data Set for Identification of Core Scientific Articles
Afzal, Z. (Creator), Coupet, P. (Creator), Tsatsaronis, G. (Creator) & Akhondi, S. (Creator), Mendeley Data, 2020
Dataset
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ChEMU Shared Task 2022
Akhondi, S. (Organizer), Thorne, C. (Organizer), Drukenbrodt, C. (Organizer) & Verspoor, K. (Organizer)
2022Activity: Participating in or organizing an event › Organizing a conference, workshop, ...
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ChEMU Shared Task 2021
Akhondi, S. (Organizer), Thorne, C. (Organizer), Drukenbrodt, C. (Organizer) & Verspoor, K. (Organizer)
2021Activity: Participating in or organizing an event › Organizing a conference, workshop, ...
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ChEMU Shared Task 2020
Akhondi, S. (Organizer), Thorne, C. (Organizer), Drukenbrodt, C. (Organizer) & Verspoor, K. (Organizer)
2020Activity: Participating in or organizing an event › Organizing a conference, workshop, ...
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Patent for system and method for text mining
Karin Verspoor (Participant) & Saber Akhondi (Participant)
2020Activity: Other
Press/Media
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How data scientists are uncovering chemical compounds hidden in patents
Verspoor, K., Tsatsaronis, G., Akhondi, S., Drukenbrodt, C., Hoessel, R., Thorne, C., Cohn, T., Nguyen, D. Q., Zhai, Z., Fang, B. & Yohsikawa, H.
11/28/19
1 Media contribution
Press/Media