Research output per year
Research output per year
- 1 - 50 out of 75 results
Search results
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2024
Knowledge Acquisition Passage Retrieval: Corpus, Ranking Models, and Evaluation Resources
Capari, A., Azarbonyad, H., Tsatsaronis, G., Afzal, Z., Dunham, J. & Kamps, J., Sep 14 2024, In: Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics).Research output: Contribution to journal › Article › peer-review
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The silver lining of COVID-19 restrictions: research output of academics under lockdown
Mehmani, B., Garcia-Costa, D., Grimaldo, F., Bravo, G. & Squazzoni, F., Jan 24 2024, In: Scientometrics.Research output: Contribution to journal › Article › peer-review
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Towards the 4th generation university: a collaboration between Elsevier and TU Eindhoven
Dumoulin, M. & Malkov, D., Apr 23 2024, In: SSRN.Research output: Contribution to journal › Article › peer-review
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2023
BioBLP: a modular framework for learning on multimodal biomedical knowledge graphs
Daza, D., Alivanistos, D., Mitra, P., Pijnenburg, T., Cochez, M. & Groth, P., Dec 1 2023, In: Journal of Biomedical Semantics. 14, 1, p. 20 1 p.Research output: Contribution to journal › Article › peer-review
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Focused Contrastive Loss for Classification With Pre-Trained Language Models
He, J., Li, Y., Zhai, Z., Fang, B., Thorne, C., Druckenbrodt, C., Akhondi, S. & Verspoor, K., Nov 3 2023, In: IEEE Transactions on Knowledge and Data Engineering.Research output: Contribution to journal › Article › peer-review
Open Access -
Pan-cancer analysis of whole genomes
Neal, D., 2023, In: Nature.Research output: Contribution to journal › Article › peer-review
Open Access -
Transparency in conducting and reporting research: A survey of authors, reviewers, and editors across scholarly disciplines
Mailcki, M., Aalbersberg, I. J., Mulligan, A., Bouter, L. & ter Riet, G., Mar 8 2023, In: PLoS ONE.Research output: Contribution to journal › Article › peer-review
Open Access -
2022
A roadmap for the functional annotation of protein families: a community perspective
Valery de Crecy-Lagard, Aug 12 2022, In: Database : the journal of biological databases and curation. 2022Research output: Contribution to journal › Article › peer-review
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Electronic health record-based patient tracking by emergency medicine physicians
Villalba, C., Burke, R., Gurley, K., Dhaliwal, G. & Grossman, S., Apr 2022, In: AEM Education and Training. 6, 2Research output: Contribution to journal › Article › peer-review
Open Access -
Identifying research supporting the United Nations Sustainable Development Goals
Kashnitsky, Y., Doornenbal, M., Roberge, G., Mu, J., Kang, K., Wang, W., Vanderfeesten, M., Rivest, M., Keßler, L., Jaworek, R., Vignes, M., Jayabalasingham, B., Boonen, F., James, C. & Labrosse, I., Sep 15 2022, In: ARXIV.Research output: Contribution to journal › Article › peer-review
Open Access -
Sustainability through a gender lens: The extent to which research on UN Sustainable Development Goals includes sex and gender consideration
Herbert, R., Falk-Krzesinski, H., James, K. & Plume, A. M., Oct 7 2022, In: PLoS ONE.Research output: Contribution to journal › Article › peer-review
Open Access -
Transparency in conducting and reporting research: a survey of authors, reviewers, and editors across scholarly disciplines
Aalbersberg, I. J., Mailcki, M., Bouter, L., Mulligan, A. & ter Riet, G., 2022, In: Research Square preprint.Research output: Contribution to journal › Article › peer-review
Open Access -
2021
A large-scale validation of the relationship between cross-disciplinary research and its uptake in policy-related documents, using the novel Overton altmetrics database
Campbell, D., Pinheiro, H. & Vignola-Gagné, E., Jul 15 2021, In: The MIT Press Journals. 2, 2, p. 616-642 27 p.Research output: Contribution to journal › Article › peer-review
Open Access -
A pre-trained Language Model for Chemical Patents
He, J., Zhai, Z., Akhondi, S., Drukenbrodt, C., Thorne, C., Yoshikawa, H. & Verspoor, K., 2021, In: International Conference Recent Advances in Natural Language Processing, RANLP.Research output: Contribution to journal › Article › peer-review
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ChemTables: a dataset for semantic classification on tables in chemical patents
Zhai, Z., Druckenbrodt, C., Thorne, C., Akhondi, S. A., Nguyen, D. Q., Cohn, T. & Verspoor, K., Dec 2021, In: Journal of Cheminformatics. 13, 1, 97.Research output: Contribution to journal › Article › peer-review
Open Access -
ChemTables: A Dataset for Semantic Classification of Tables in Chemical Patents.
Zhai, Z., Drukenbrodt, C., Thorne, C., Akhondi, S., Nguyen, D. Q., Cohn, T. & Verspoor, K., 2021, In: Research Square preprint.Research output: Contribution to journal › Article › peer-review
Open Access -
Gender gap in journal submissions and peer review during the first wave of the COVID-19 pandemic. A study on 2329 Elsevier journals
Squazzinioni, F., Bravo, G., Grimaldo, F., Garcia-Costa, D., Farjam, M. & Mehmani, B., Oct 20 2021, In: PLoS ONE.Research output: Contribution to journal › Article › peer-review
Open Access -
Measuring the Developmental Function of Peer Review: A Multi-Dimensional, Cross-Disciplinary Analysis of Peer Review Reports from 740 Academic Journals
Garcia-Costa, D., Squazzinioni, F., Mehmani, B. & Grimaldo, F., Aug 31 2021, In: SSRN.Research output: Contribution to journal › Article
Open Access -
Natural Language Processing Methods are Effective for Information Extraction from Chemical Patents. Under review at Frontiers i n Research Metrics and Analytics, section Text-mining and Literature-based Discovery
He, J., Nguyen, D. Q., Akhondi, S., Drukenbrodt, C., Thorne, C., Hoessel, R., Afzal, Z., Zhai, Z., Fang, B., Yoshikawa, H., Albahem, A., Cavedon, L., Cohn, T., Baldwin, T. & Verspoor, K., 2021, In: Frontiers in Bioscience - Landmark.Research output: Contribution to journal › Article › peer-review
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Overview of ChEMU 2021: Reaction Reference Resolution and Anaphora Resolution in Chemical Patents
Li, Y., Fang, B., He, J., Yoshikawa, H., Akhondi, S., Drukenbrodt, C., Thorne, C., Afzal, Z., Zhai, Z., Baldwin, T. & Verspoor, K., 2021, In: International Conference of the Cross-Language Evaluation Forum for European Languages. p. 292-307 16 p.Research output: Contribution to journal › Article › peer-review
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Peer review and gender bias: A study on 145 scholarly journals
Squazzinioni, F., Bravo, G., Farjam, M., Marusic, A., Mehmani, B., Willis, M., Birukou, A. & Grimaldo, F., Jan 6 2021, In: Science advances. 7, 2Research output: Contribution to journal › Article › peer-review
Open Access2 Scopus citations -
Preface: DISCO2021 - Digital infrastructures for scholarly content objects at JCDL2021: DISCO2021 - Digital infrastructures for scholarly content objects at JCDL2021
Balke, W. T., de Waard, A., Fu, Y., Hua, B., Schneider, J., Song, N., Wang, X., Aizawa, A., Allen, B., Auer, S., Bölling, C., Boudin, F., Burns, G., Chan, J., Clark, T., D'Souza, J., Fox, E., Green, N., Kroll, H. & Oelen, A. & 3 others, , 2021, In: CEUR Workshop Proceedings. 2976Research output: Contribution to journal › Article › peer-review
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Publizieren und Lesen in den Zeiten der Pandemie
Translated title of the contribution :Publishing and reading in the times of the pandemic Research output: Contribution to journal › Article › peer-review
Open Access -
Systematic review and meta-analyses of studies analysing instructions to authors from 1987 to 2017
Malički, M., Jerončić, A., Aalbersberg, I. J., Bouter, L. & ter Riet, G., Dec 2021, In: Nature Communications. 12, 1, p. 5840 5840.Research output: Contribution to journal › Article › peer-review
Open Access -
The Medical University of Vienna and the legacy of Pernkopf’s anatomical atlas: Elsevier’s donation of the original drawings to the Josephinum
Voegler, M., Sep 2021, In: Annals of Anatomy. 237, 151693.Research output: Contribution to journal › Article › peer-review
Open Access -
2020
A deep learning system accurately classifies primary and metastatic cancers using passenger mutation patterns
Neal, D., 2020, In: Nature Communications.Research output: Contribution to journal › Article › peer-review
Open Access -
Co-occurrence of Cell Lines, Basal Media and Supplementation in the Biomedical Research Literature
Cox, J., McBeath, D., Harper, C. A. & Daniel, R., Aug 1 2020, In: Journal of Data and Information Science. 5, 3, p. 161-177 17 p.Research output: Contribution to journal › Article › peer-review
Open Access1 Scopus citations -
CORA: A Deep Active Learning Covid-19 Relevancy Algorithm to Identify Core Scientific Articles
Afzal, Z., Yadav, V., Fedorova, O., Kandala, V., van de Loo, J., Akhondi, S. & Coupet, P., Nov 29 2020, In: EMNLP2020.Research output: Contribution to journal › Article › peer-review
Open Access -
Elsevier OA CC-By Corpus
Kershaw, D. & Koeling, R., 2020, In: ARXIV. abs/2008.00774, 6 p.Research output: Contribution to journal › Article
Open AccessFile -
Modeling adaptive response profiles in a vaccine clinical trial
Hasdemir, D., van den Berg, R. A., van Kampen, A. & Smilde, A. K., 2020, In: BMC Medical Research Methodology. 20, 1, p. 1-13 13 p.Research output: Contribution to journal › Article › peer-review
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No evidence of any systematic bias against manuscripts by women in the peer review process of 145 scholarly journals
Squazzinioni, F., Marusic, A., Mehmani, B. & Grimaldo, F., 2020, In: ARXIV.Research output: Contribution to journal › Article › peer-review
Open Access -
Preprint Servers’ Policies, Submission Requirements, and Transparency in Reporting and Research Integrity Recommendations
Malički, M., Jerončić, A., ter Riet, G., Bouter, L., Ioannidis, J., Goodman, S. & Aalbersberg, I. J., 2020, In: JAMA network open.Research output: Contribution to journal › Article › peer-review
Open Access -
Scopus as a curated, high-quality bibliometric data source for academic research in quantitative science studies
Baas, J., Schotten, M., Plume, A. M., Cote, G. & Karimi, R., Feb 2020, In: The MIT Press Journals. 1, 1, p. 377-386 10 p.Research output: Contribution to journal › Article › peer-review
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Sustainability Through a Gender Lens: The Extent to Which Research on UN Sustainable Development Goals (SDGs) Includes Sex and Gender Consideration
Herbert, R., Falk-Krzesinski, H. & Plume, A. M., Sep 9 2020, In: SSRN.Research output: Contribution to journal › Article
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Transcriptional profiles of adjuvanted hepatitis B vaccines display variable interindividual homogeneity but a shared core signature
De Mot, L., Bechtold, V., Bol, V., Callegaro, A., Coccia, M., Essaghir, A., Hasdemir, D., Ulloa-Montoya, F., Siena, E. & Smilde, A., 2020, In: Science Translational Medicine. 12, 569Research output: Contribution to journal › Article › peer-review
1 Scopus citations -
2019
A standardized citation metrics author database annotated for scientific field
Ioannidis, J., Baas, J., Klavans, R. & Boyack, K., 2019, In: PLoS Biology.Research output: Contribution to journal › Article › peer-review
Open Access59 Scopus citations -
Automatic identification of relevant chemical compounds from patents
Akhondi, S. A., Rey, H., Schwörer, M., Maier, M., Toomey, J., Nau, H., Ilchmann, G., Sheehan, M., Irmer, M., Bobach, C., Doornenbal, M., Gregory, M. & Kors, J. A., Jan 1 2019, In: Database. 2019, baz001.Research output: Contribution to journal › Article › peer-review
Open Access8 Scopus citations -
Characterizing and predicting downloads in academic search
Li, X. & de Rijke, M., May 2019, In: Information Processing and Management. 56, 3, p. 394-407 14 p.Research output: Contribution to journal › Article › peer-review
4 Scopus citations -
Comparison of two article-level, field-independent citation metrics: Field-Weighted Citation Impact (FWCI) and Relative Citation Ratio (RCR)
Purkayastha, A., Palmaro, E., Falk-Krzesinski, H. J. & Baas, J., May 1 2019, In: Journal of Informetrics. 13, 2, p. 635-642 8 p.Research output: Contribution to journal › Article › peer-review
Open Access18 Scopus citations -
Data discovery paradigms: User requirements and recommendations for data repositories
Wu, M., Psomopoulos, F., de Waard, A. & Khalsa, S. J., Jan 1 2019, In: Data Science Journal. 18, 1, 3.Research output: Contribution to journal › Article › peer-review
Open Access4 Scopus citations -
Journals’ instructions to authors: A cross-sectional study across scientific disciplines
Malički, M., Aalbersberg, I. J., Bouter, L. & ter Riet, G., Sep 5 2019, In: PLoS ONE. 14, 9, p. e0222157 e0222157.Research output: Contribution to journal › Article › peer-review
Open Access6 Scopus citations -
Measuring scientific contributions with modified fractional counting
Sivertsen, G., Rousseau, R. & Zhang, L., 2019, In: Journal of Informetrics.Research output: Contribution to journal › Article › peer-review
Open Access -
ORCID, RRID’s and Research Objects, Oh My!
De Waard, A., Oct 15 2019, In: Septentrio Conference Series. 1Research output: Contribution to journal › Article
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Population-level mathematical modeling of antimicrobial resistance: a systematic review
Jayabalasingham, B. & Viboud, C., Apr 24 2019, In: BMC Medicine. 17, 1, p. 81 81.Research output: Contribution to journal › Article › peer-review
Open Access19 Scopus citations -
Searching Data: A Review of Observational Data Retrieval Practices in Selected Disciplines
Gregory, K., Groth, P., Cousijn, H., Scharnhorst, A. & Wyatt, S., May 1 2019, In: Journal of the Association for Information Science and Technology. 70, 5, p. 419-432 14 p.Research output: Contribution to journal › Article › peer-review
Open Access9 Scopus citations -
The effect of publishing peer review reports on referee behavior in five scholarly journals
Grimaldo, F., Mehmani, B. & Squazzinioni, F., 2019, In: Nature Communications.Research output: Contribution to journal › Article › peer-review
Open Access23 Scopus citations -
2018
A big data approach to the concordance of the toxicity of pharmaceuticals in animals and humans
Clark, M. & Steger-Hartmann, T., Jul 1 2018, In: Regulatory Toxicology and Pharmacology. 96, p. 94-105 12 p.Research output: Contribution to journal › Article › peer-review
Open Access53 Scopus citations -
Measure of National Return in International Science Cooperation
Baas, J., 2018, In: STI 2018 conference Proceedings.Research output: Contribution to journal › Article › peer-review
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Openness and impact of leading scientific countries
Baas, J., 2018, In: Frontiers in Research metrics and Analytics.Research output: Contribution to journal › Article › peer-review
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The principles of tomorrow's university [version 1; referees: 2 approved]
Katz, D. S., Allen, G., Barba, L. A., Berg, D. R., Bik, H., Boettiger, C., Borgman, C. L., Brown, C. T., Buck, S., Burd, R., de Waard, A., Eve, M. P., Granger, B. E., Greenberg, J., Howe, A., Howe, B., Khanna, M., Killeen, T. L., Mayernik, M. & McKiernan, E. & 12 others, , Jan 1 2018, In: F1000Research. 7, 1926.Research output: Contribution to journal › Article › peer-review
Open Access2 Scopus citations